Results 1 - 20 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24326 | 3' | -55.2 | NC_005263.2 | + | 7224 | 0.66 | 0.661705 |
Target: 5'- cCGGCgACCAgaaGGCGCGCGCCUc--- -3' miRNA: 3'- aGUCGaUGGUg--UUGCGUGCGGAcgug -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 34364 | 0.66 | 0.62676 |
Target: 5'- cCGGCcugGCCGCcggcgguAACGC-CGCgaGCACg -3' miRNA: 3'- aGUCGa--UGGUG-------UUGCGuGCGgaCGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 41660 | 0.66 | 0.62676 |
Target: 5'- uUCGGCgacugccUGCuCGCGAUGCACgaguuGCCcGCACa -3' miRNA: 3'- -AGUCG-------AUG-GUGUUGCGUG-----CGGaCGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 37600 | 0.66 | 0.62112 |
Target: 5'- cUCGGUg--CACAACGUGCGCuucgacggcaagcacCUGCGCg -3' miRNA: 3'- -AGUCGaugGUGUUGCGUGCG---------------GACGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 29824 | 0.66 | 0.617736 |
Target: 5'- gCAGC-GCgCACGACGagcgcaucgcccggaACGCCUGCGa -3' miRNA: 3'- aGUCGaUG-GUGUUGCg--------------UGCGGACGUg -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 1412 | 0.66 | 0.616609 |
Target: 5'- --uGCUugUcguCGGCGCGCGCCgccuuggcUGCGCg -3' miRNA: 3'- aguCGAugGu--GUUGCGUGCGG--------ACGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 37710 | 0.66 | 0.616609 |
Target: 5'- gCGGUUACCGCuACGUGCcgGUCaUGCGCu -3' miRNA: 3'- aGUCGAUGGUGuUGCGUG--CGG-ACGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 5463 | 0.66 | 0.616609 |
Target: 5'- aUCGGUUGCCACGucgGCGC-UGCUUcGUGCu -3' miRNA: 3'- -AGUCGAUGGUGU---UGCGuGCGGA-CGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 10378 | 0.66 | 0.616609 |
Target: 5'- gUCAGCgucuCCcgAGCGCAUGaCCgGCACg -3' miRNA: 3'- -AGUCGau--GGugUUGCGUGC-GGaCGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 24491 | 0.66 | 0.627888 |
Target: 5'- cCGGCUcgACCACggUGC-CGCCgaacGuCACg -3' miRNA: 3'- aGUCGA--UGGUGuuGCGuGCGGa---C-GUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 5957 | 0.66 | 0.627888 |
Target: 5'- cCGGCaacUGgCGCAccucGCGaCACGCCUcGCGCg -3' miRNA: 3'- aGUCG---AUgGUGU----UGC-GUGCGGA-CGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 21671 | 0.66 | 0.639171 |
Target: 5'- --cGCUGCUGCAGauuCGCAucgacCGCCUGaCGCg -3' miRNA: 3'- aguCGAUGGUGUU---GCGU-----GCGGAC-GUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 30757 | 0.66 | 0.661705 |
Target: 5'- gCAGUUGCCuuguCGacACGCACGacuuCCUcGCGCa -3' miRNA: 3'- aGUCGAUGGu---GU--UGCGUGC----GGA-CGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 21427 | 0.66 | 0.661705 |
Target: 5'- gCGGCUACCuCGAaGU-CGCCUGCcCg -3' miRNA: 3'- aGUCGAUGGuGUUgCGuGCGGACGuG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 47364 | 0.66 | 0.658331 |
Target: 5'- aUCAGgUGCUGCAggGCGCAacggcaaucaaccuCGCCacgGCGCu -3' miRNA: 3'- -AGUCgAUGGUGU--UGCGU--------------GCGGa--CGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 26889 | 0.66 | 0.650447 |
Target: 5'- aCGGCUGCgACGcgcucgaaACGCAcccacuCGCCcGCGCc -3' miRNA: 3'- aGUCGAUGgUGU--------UGCGU------GCGGaCGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 22006 | 0.66 | 0.650447 |
Target: 5'- gCGGCgcgUACCAgGACGCGCucgGCC-GCAUc -3' miRNA: 3'- aGUCG---AUGGUgUUGCGUG---CGGaCGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 37942 | 0.66 | 0.647065 |
Target: 5'- cCGGCaGCCGguGCGCaaccggccgaugccGCGCCggcugGCGCu -3' miRNA: 3'- aGUCGaUGGUguUGCG--------------UGCGGa----CGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 33789 | 0.66 | 0.639171 |
Target: 5'- aCGGUcacggGCCACGACGauaGCGUCgacgGCAUg -3' miRNA: 3'- aGUCGa----UGGUGUUGCg--UGCGGa---CGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 29404 | 0.66 | 0.639171 |
Target: 5'- -gGGUUGCCGCc---CGCGCCUGcCGCg -3' miRNA: 3'- agUCGAUGGUGuugcGUGCGGAC-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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