miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 3' -55.2 NC_005263.2 + 958 0.74 0.214266
Target:  5'- gCGGCgACguaGCGGCGguCGCCUGCGCg -3'
miRNA:   3'- aGUCGaUGg--UGUUGCguGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 1412 0.66 0.616609
Target:  5'- --uGCUugUcguCGGCGCGCGCCgccuuggcUGCGCg -3'
miRNA:   3'- aguCGAugGu--GUUGCGUGCGG--------ACGUG- -5'
24326 3' -55.2 NC_005263.2 + 1899 0.73 0.272248
Target:  5'- -gGGUUGCCGaucaggaaguacCAGcCGCGCGUCUGCACg -3'
miRNA:   3'- agUCGAUGGU------------GUU-GCGUGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 1981 0.68 0.527681
Target:  5'- gCAGUUGCgAguucgUAGCGuCACGCCgGCGCg -3'
miRNA:   3'- aGUCGAUGgU-----GUUGC-GUGCGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 2981 0.69 0.443946
Target:  5'- gUCAGCggaaUGCCuaGACGCuCGCCgGCGCa -3'
miRNA:   3'- -AGUCG----AUGGugUUGCGuGCGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 3311 0.67 0.576194
Target:  5'- -gGGCgcgGCCGCGcgguguucaacgucuGCGCGcCGCCgGCGCc -3'
miRNA:   3'- agUCGa--UGGUGU---------------UGCGU-GCGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 3482 0.74 0.228607
Target:  5'- aUCAGCUGCCGCAGCGagucgggcaaguuguCGCGCgCgGCAa -3'
miRNA:   3'- -AGUCGAUGGUGUUGC---------------GUGCG-GaCGUg -5'
24326 3' -55.2 NC_005263.2 + 4842 0.72 0.309588
Target:  5'- gUCGGUUGCC-CGuacGCGCGCGCCgUGC-Cg -3'
miRNA:   3'- -AGUCGAUGGuGU---UGCGUGCGG-ACGuG- -5'
24326 3' -55.2 NC_005263.2 + 4876 0.7 0.395556
Target:  5'- --cGCUGCCGCcgcucaccauguAGCGCGCGCUgcgauaGCGCg -3'
miRNA:   3'- aguCGAUGGUG------------UUGCGUGCGGa-----CGUG- -5'
24326 3' -55.2 NC_005263.2 + 5081 0.73 0.251631
Target:  5'- gUCAGgUGCCAacccGCGCAgUGCUUGCACg -3'
miRNA:   3'- -AGUCgAUGGUgu--UGCGU-GCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 5463 0.66 0.616609
Target:  5'- aUCGGUUGCCACGucgGCGC-UGCUUcGUGCu -3'
miRNA:   3'- -AGUCGAUGGUGU---UGCGuGCGGA-CGUG- -5'
24326 3' -55.2 NC_005263.2 + 5528 0.73 0.279416
Target:  5'- aUCGGCUAUguaaACGAgGCAugUGCCUGCGCc -3'
miRNA:   3'- -AGUCGAUGg---UGUUgCGU--GCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 5957 0.66 0.627888
Target:  5'- cCGGCaacUGgCGCAccucGCGaCACGCCUcGCGCg -3'
miRNA:   3'- aGUCG---AUgGUGU----UGC-GUGCGGA-CGUG- -5'
24326 3' -55.2 NC_005263.2 + 6550 0.71 0.333805
Target:  5'- -aAGCUcgcaucgccGCCACGGCGCgccgcGCGUUUGCGCa -3'
miRNA:   3'- agUCGA---------UGGUGUUGCG-----UGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 6822 0.68 0.516857
Target:  5'- gCAGUgACUGCAguucuuGCGCACuGCaCUGCGCg -3'
miRNA:   3'- aGUCGaUGGUGU------UGCGUG-CG-GACGUG- -5'
24326 3' -55.2 NC_005263.2 + 7015 0.7 0.424186
Target:  5'- uUCAGCUuuuGuuGCAuguCGCGCGCCgacggaugGCGCa -3'
miRNA:   3'- -AGUCGA---UggUGUu--GCGUGCGGa-------CGUG- -5'
24326 3' -55.2 NC_005263.2 + 7224 0.66 0.661705
Target:  5'- cCGGCgACCAgaaGGCGCGCGCCUc--- -3'
miRNA:   3'- aGUCGaUGGUg--UUGCGUGCGGAcgug -5'
24326 3' -55.2 NC_005263.2 + 7265 0.69 0.468324
Target:  5'- aUCAGCUccaucgacggggcgaGCgACAugACGCGUGCCUGCGg -3'
miRNA:   3'- -AGUCGA---------------UGgUGU--UGCGUGCGGACGUg -5'
24326 3' -55.2 NC_005263.2 + 7459 0.67 0.582897
Target:  5'- -aGGCUuccuGCUGC-ACGC-CGCUUGCGCg -3'
miRNA:   3'- agUCGA----UGGUGuUGCGuGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 8770 0.72 0.323144
Target:  5'- aUCGGCUGCCagccccgggugaGCAgccaaccugcgaucGCGCGCGCaUGCGCc -3'
miRNA:   3'- -AGUCGAUGG------------UGU--------------UGCGUGCGgACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.