miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24326 3' -55.2 NC_005263.2 + 45436 1.09 0.000668
Target:  5'- aUCAGCUACCACAACGCACGCCUGCACc -3'
miRNA:   3'- -AGUCGAUGGUGUUGCGUGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 27977 0.84 0.044978
Target:  5'- -gAGCUGCUGCGcgcgaGCGUACGCCUGCGCa -3'
miRNA:   3'- agUCGAUGGUGU-----UGCGUGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 10178 0.82 0.064335
Target:  5'- cCGGCUGCCG--GCgGCGCGCCUGCGCc -3'
miRNA:   3'- aGUCGAUGGUguUG-CGUGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 45811 0.78 0.133383
Target:  5'- -gGGCgugccgGCCACGGCGCACGaCCUGC-Cg -3'
miRNA:   3'- agUCGa-----UGGUGUUGCGUGC-GGACGuG- -5'
24326 3' -55.2 NC_005263.2 + 38515 0.76 0.158091
Target:  5'- aUCGcGCUGCCGCAaugggacggcACGCAgCGCCUGgACa -3'
miRNA:   3'- -AGU-CGAUGGUGU----------UGCGU-GCGGACgUG- -5'
24326 3' -55.2 NC_005263.2 + 46802 0.75 0.192083
Target:  5'- aUCAGCUgcaauucacGCCgaucgcguaacGCAACGCGCGCCaggcgGCGCg -3'
miRNA:   3'- -AGUCGA---------UGG-----------UGUUGCGUGCGGa----CGUG- -5'
24326 3' -55.2 NC_005263.2 + 32536 0.75 0.196892
Target:  5'- --cGCUACCGuCAuucggcguucagcGCGCGCGUCUGCGCc -3'
miRNA:   3'- aguCGAUGGU-GU-------------UGCGUGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 29233 0.75 0.197432
Target:  5'- gUCGGCg--CGCAGCgGCGCGCCgagGCACg -3'
miRNA:   3'- -AGUCGaugGUGUUG-CGUGCGGa--CGUG- -5'
24326 3' -55.2 NC_005263.2 + 22110 0.75 0.208522
Target:  5'- aCGGCUGCCGCcg-GCACGCUgcaaGCGCg -3'
miRNA:   3'- aGUCGAUGGUGuugCGUGCGGa---CGUG- -5'
24326 3' -55.2 NC_005263.2 + 40069 0.75 0.208522
Target:  5'- gCGGC-GCCACGGCGCggACGCCUcGCAa -3'
miRNA:   3'- aGUCGaUGGUGUUGCG--UGCGGA-CGUg -5'
24326 3' -55.2 NC_005263.2 + 958 0.74 0.214266
Target:  5'- gCGGCgACguaGCGGCGguCGCCUGCGCg -3'
miRNA:   3'- aGUCGaUGg--UGUUGCguGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 35621 0.74 0.220145
Target:  5'- gCAGgaUGCCGCAAUGCGCGCCgccgGUAUc -3'
miRNA:   3'- aGUCg-AUGGUGUUGCGUGCGGa---CGUG- -5'
24326 3' -55.2 NC_005263.2 + 31411 0.74 0.225553
Target:  5'- gCAGCUGCUGCAGCaugugcgGCACGuCCUGCu- -3'
miRNA:   3'- aGUCGAUGGUGUUG-------CGUGC-GGACGug -5'
24326 3' -55.2 NC_005263.2 + 3482 0.74 0.228607
Target:  5'- aUCAGCUGCCGCAGCGagucgggcaaguuguCGCGCgCgGCAa -3'
miRNA:   3'- -AGUCGAUGGUGUUGC---------------GUGCG-GaCGUg -5'
24326 3' -55.2 NC_005263.2 + 36180 0.74 0.230455
Target:  5'- cCGGUgcgACCuuCAACGCuucguugacgaagaGCGCCUGCACg -3'
miRNA:   3'- aGUCGa--UGGu-GUUGCG--------------UGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 20967 0.74 0.232316
Target:  5'- gUCGGacaucGCCgacGCGGCuGCGCGCCUGCGCg -3'
miRNA:   3'- -AGUCga---UGG---UGUUG-CGUGCGGACGUG- -5'
24326 3' -55.2 NC_005263.2 + 16536 0.74 0.238612
Target:  5'- gUCGGCguugucgAgCACGGCGCGcCGCCUGgGCa -3'
miRNA:   3'- -AGUCGa------UgGUGUUGCGU-GCGGACgUG- -5'
24326 3' -55.2 NC_005263.2 + 12927 0.74 0.238612
Target:  5'- -gAGCUGCUGCAGCGCauuGCGCUgGUACg -3'
miRNA:   3'- agUCGAUGGUGUUGCG---UGCGGaCGUG- -5'
24326 3' -55.2 NC_005263.2 + 21904 0.74 0.245049
Target:  5'- aCGGCcGCCGCAuCGCGCGgCCgccGCGCg -3'
miRNA:   3'- aGUCGaUGGUGUuGCGUGC-GGa--CGUG- -5'
24326 3' -55.2 NC_005263.2 + 5081 0.73 0.251631
Target:  5'- gUCAGgUGCCAacccGCGCAgUGCUUGCACg -3'
miRNA:   3'- -AGUCgAUGGUgu--UGCGU-GCGGACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.