Results 1 - 20 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24326 | 3' | -55.2 | NC_005263.2 | + | 45436 | 1.09 | 0.000668 |
Target: 5'- aUCAGCUACCACAACGCACGCCUGCACc -3' miRNA: 3'- -AGUCGAUGGUGUUGCGUGCGGACGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 6550 | 0.71 | 0.333805 |
Target: 5'- -aAGCUcgcaucgccGCCACGGCGCgccgcGCGUUUGCGCa -3' miRNA: 3'- agUCGA---------UGGUGUUGCG-----UGCGGACGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 17183 | 0.71 | 0.34218 |
Target: 5'- gCAGCU--CGCGGCGUACGCCgucgccGCGCu -3' miRNA: 3'- aGUCGAugGUGUUGCGUGCGGa-----CGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 15204 | 0.66 | 0.66283 |
Target: 5'- gUCAGCggGCCGcCGACGCcgacgccacgaaacuCGCCgcccgccgGCACa -3' miRNA: 3'- -AGUCGa-UGGU-GUUGCGu--------------GCGGa-------CGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 40069 | 0.75 | 0.208522 |
Target: 5'- gCGGC-GCCACGGCGCggACGCCUcGCAa -3' miRNA: 3'- aGUCGaUGGUGUUGCG--UGCGGA-CGUg -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 31411 | 0.74 | 0.225553 |
Target: 5'- gCAGCUGCUGCAGCaugugcgGCACGuCCUGCu- -3' miRNA: 3'- aGUCGAUGGUGUUG-------CGUGC-GGACGug -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 20967 | 0.74 | 0.232316 |
Target: 5'- gUCGGacaucGCCgacGCGGCuGCGCGCCUGCGCg -3' miRNA: 3'- -AGUCga---UGG---UGUUG-CGUGCGGACGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 12927 | 0.74 | 0.238612 |
Target: 5'- -gAGCUGCUGCAGCGCauuGCGCUgGUACg -3' miRNA: 3'- agUCGAUGGUGUUGCG---UGCGGaCGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 1899 | 0.73 | 0.272248 |
Target: 5'- -gGGUUGCCGaucaggaaguacCAGcCGCGCGUCUGCACg -3' miRNA: 3'- agUCGAUGGU------------GUU-GCGUGCGGACGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 37215 | 0.71 | 0.333805 |
Target: 5'- gCGGCgauacgccGCuCACGACGCGCGCCgGUGCc -3' miRNA: 3'- aGUCGa-------UG-GUGUUGCGUGCGGaCGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 9706 | 0.72 | 0.294201 |
Target: 5'- cCuGCUcgACCGCuGCgGCGCGCUUGCGCu -3' miRNA: 3'- aGuCGA--UGGUGuUG-CGUGCGGACGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 24085 | 0.73 | 0.251631 |
Target: 5'- cCAGCUGCCGa---GCGCGUCgGCACu -3' miRNA: 3'- aGUCGAUGGUguugCGUGCGGaCGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 10178 | 0.82 | 0.064335 |
Target: 5'- cCGGCUGCCG--GCgGCGCGCCUGCGCc -3' miRNA: 3'- aGUCGAUGGUguUG-CGUGCGGACGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 4842 | 0.72 | 0.309588 |
Target: 5'- gUCGGUUGCC-CGuacGCGCGCGCCgUGC-Cg -3' miRNA: 3'- -AGUCGAUGGuGU---UGCGUGCGG-ACGuG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 38515 | 0.76 | 0.158091 |
Target: 5'- aUCGcGCUGCCGCAaugggacggcACGCAgCGCCUGgACa -3' miRNA: 3'- -AGU-CGAUGGUGU----------UGCGU-GCGGACgUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 21904 | 0.74 | 0.245049 |
Target: 5'- aCGGCcGCCGCAuCGCGCGgCCgccGCGCg -3' miRNA: 3'- aGUCGaUGGUGUuGCGUGC-GGa--CGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 21167 | 0.71 | 0.332976 |
Target: 5'- gCGGCUacGCCACGgggccggacgcggACGCGCGCg-GCGCg -3' miRNA: 3'- aGUCGA--UGGUGU-------------UGCGUGCGgaCGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 12557 | 0.71 | 0.34218 |
Target: 5'- cCGGCggcGCCGUAGCGCcCGCCcGCGCg -3' miRNA: 3'- aGUCGa--UGGUGUUGCGuGCGGaCGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 29233 | 0.75 | 0.197432 |
Target: 5'- gUCGGCg--CGCAGCgGCGCGCCgagGCACg -3' miRNA: 3'- -AGUCGaugGUGUUG-CGUGCGGa--CGUG- -5' |
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24326 | 3' | -55.2 | NC_005263.2 | + | 36180 | 0.74 | 0.230455 |
Target: 5'- cCGGUgcgACCuuCAACGCuucguugacgaagaGCGCCUGCACg -3' miRNA: 3'- aGUCGa--UGGu-GUUGCG--------------UGCGGACGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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