miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24327 3' -55.5 NC_005263.2 + 48004 0.66 0.717998
Target:  5'- cUCGACaCGAcUACCGGcaccgGCgGGCaGGCGCu -3'
miRNA:   3'- -GGCUG-GUU-AUGGCU-----UGaCCG-CCGCGc -5'
24327 3' -55.5 NC_005263.2 + 47908 0.69 0.506532
Target:  5'- gCCaACCAAgcgGCCGGGCgcacgGGCagcgggcucgccccgGGCGCGg -3'
miRNA:   3'- -GGcUGGUUa--UGGCUUGa----CCG---------------CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 47830 0.76 0.207049
Target:  5'- gUCGACCGugACCGuGCUcGGUGGCGUGa -3'
miRNA:   3'- -GGCUGGUuaUGGCuUGA-CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 47353 0.68 0.576683
Target:  5'- gCGcuGCgCGucGCCGAAaugGGCGGCGCGu -3'
miRNA:   3'- gGC--UG-GUuaUGGCUUga-CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 46463 0.68 0.587537
Target:  5'- gUCGACCAGUucacgaucACCGAACUGaccgacgcacuCGGCGuCGa -3'
miRNA:   3'- -GGCUGGUUA--------UGGCUUGACc----------GCCGC-GC- -5'
24327 3' -55.5 NC_005263.2 + 46420 1.1 0.000787
Target:  5'- aCCGACCAAUACCGAACUGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUUAUGGCUUGACCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 46269 0.7 0.471817
Target:  5'- gCCGGCCugcacacuuuGGUACuCGGAC-GGCGGCaGCa -3'
miRNA:   3'- -GGCUGG----------UUAUG-GCUUGaCCGCCG-CGc -5'
24327 3' -55.5 NC_005263.2 + 45827 0.75 0.244733
Target:  5'- aUGACCGAUuugaccgcaaccuugGCCGAGC-GcGCGGCGCGc -3'
miRNA:   3'- gGCUGGUUA---------------UGGCUUGaC-CGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 45654 0.68 0.587537
Target:  5'- -gGugCu-UGCCGAGCUGGCcGCGUu -3'
miRNA:   3'- ggCugGuuAUGGCUUGACCGcCGCGc -5'
24327 3' -55.5 NC_005263.2 + 44764 0.71 0.423072
Target:  5'- cUCGACCGcgcGCgGcGCcGGCGGCGCGc -3'
miRNA:   3'- -GGCUGGUua-UGgCuUGaCCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 44151 0.71 0.386326
Target:  5'- aCGGCC--UGCCaGGcucGCUGGCuGGCGCGu -3'
miRNA:   3'- gGCUGGuuAUGG-CU---UGACCG-CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 43863 0.7 0.432581
Target:  5'- aCCGACCug-ACCGAGCacgGGCuaGGcCGCu -3'
miRNA:   3'- -GGCUGGuuaUGGCUUGa--CCG--CC-GCGc -5'
24327 3' -55.5 NC_005263.2 + 43346 0.71 0.389905
Target:  5'- -gGAUCGAUACCGuucgaugucggugaaAGCUGGCgugcucgcgGGCGCGa -3'
miRNA:   3'- ggCUGGUUAUGGC---------------UUGACCG---------CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 43065 0.7 0.461835
Target:  5'- gUCGGCCAAUagucggccGCCGGGCcGGCugucgaGCGCGg -3'
miRNA:   3'- -GGCUGGUUA--------UGGCUUGaCCGc-----CGCGC- -5'
24327 3' -55.5 NC_005263.2 + 43017 0.67 0.653125
Target:  5'- cUCGugCAAgcacUGCgCGggUUGGCaccugacgcGGCGCGa -3'
miRNA:   3'- -GGCugGUU----AUG-GCuuGACCG---------CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 42745 0.69 0.512774
Target:  5'- cCCGAUCGAcccgaagaauCCGGGCauccacGGCGGCGUGa -3'
miRNA:   3'- -GGCUGGUUau--------GGCUUGa-----CCGCCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 42341 0.67 0.609347
Target:  5'- gCCGACCGaagcGUAUCGcguGCUGcuGCaGCGCGa -3'
miRNA:   3'- -GGCUGGU----UAUGGCu--UGAC--CGcCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 41338 0.67 0.620285
Target:  5'- uUCGACgAG-GCCGAGCUcGCccGGCGCGc -3'
miRNA:   3'- -GGCUGgUUaUGGCUUGAcCG--CCGCGC- -5'
24327 3' -55.5 NC_005263.2 + 40697 0.67 0.631235
Target:  5'- gCGGCCGA---CGAACUGuuCGGCGCa -3'
miRNA:   3'- gGCUGGUUaugGCUUGACc-GCCGCGc -5'
24327 3' -55.5 NC_005263.2 + 40049 0.66 0.717998
Target:  5'- -gGACUGAUcACgGAACUcGcGCGGCGCc -3'
miRNA:   3'- ggCUGGUUA-UGgCUUGA-C-CGCCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.