miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24329 3' -57.7 NC_005263.2 + 47344 1.06 0.000779
Target:  5'- uCGUACAUCGCGCUGCGCGUCGCCGAAa -3'
miRNA:   3'- -GCAUGUAGCGCGACGCGCAGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 47260 0.66 0.505207
Target:  5'- gGUACGcugucCGCGCUcgguagugacGUGCG-CGCCGAAg -3'
miRNA:   3'- gCAUGUa----GCGCGA----------CGCGCaGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 46678 0.66 0.503131
Target:  5'- --aGCcUCGCGCgcagccaaggcgGCGCG-CGCCGAc -3'
miRNA:   3'- gcaUGuAGCGCGa-----------CGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 45603 0.67 0.494862
Target:  5'- uGUACGUCGCGCccgaucucgagGCaGCGUCGaucgucaCGAAc -3'
miRNA:   3'- gCAUGUAGCGCGa----------CG-CGCAGCg------GCUU- -5'
24329 3' -57.7 NC_005263.2 + 45386 0.7 0.313335
Target:  5'- uCGUACGUgaugcacgCGCGCUGCGCaugcaccUGCCGAGc -3'
miRNA:   3'- -GCAUGUA--------GCGCGACGCGca-----GCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 45311 0.67 0.474468
Target:  5'- gCGUAUGaCGCGCUGCGCaaucgcuucacgGUCGUgaCGAAc -3'
miRNA:   3'- -GCAUGUaGCGCGACGCG------------CAGCG--GCUU- -5'
24329 3' -57.7 NC_005263.2 + 44553 0.72 0.237148
Target:  5'- uCGgcCGaCGCGCUGCGCGgcacugCGCUGAu -3'
miRNA:   3'- -GCauGUaGCGCGACGCGCa-----GCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 42126 0.69 0.379548
Target:  5'- --aGCGUCGUGCUGCGCGacgaggcgugUCG-CGAGg -3'
miRNA:   3'- gcaUGUAGCGCGACGCGC----------AGCgGCUU- -5'
24329 3' -57.7 NC_005263.2 + 41487 0.66 0.536772
Target:  5'- -cUGCucgacCGCGCcgaGCGCGcCGCCGAAc -3'
miRNA:   3'- gcAUGua---GCGCGa--CGCGCaGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 41184 0.7 0.313335
Target:  5'- uCGaUACGUugCGCGCUGUGCGUC-CUGAu -3'
miRNA:   3'- -GC-AUGUA--GCGCGACGCGCAGcGGCUu -5'
24329 3' -57.7 NC_005263.2 + 38017 0.67 0.444692
Target:  5'- gCGaACAUucucgaCGCGCUGCccGCGUCGCuCGGc -3'
miRNA:   3'- -GCaUGUA------GCGCGACG--CGCAGCG-GCUu -5'
24329 3' -57.7 NC_005263.2 + 37917 0.66 0.558192
Target:  5'- aCGaACAgCGgGCgcagGCGCGcCGCCGGc -3'
miRNA:   3'- -GCaUGUaGCgCGa---CGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 37812 0.66 0.547449
Target:  5'- aCG-ACGggCGCGCauccgGCGCucauGUCGCCGAc -3'
miRNA:   3'- -GCaUGUa-GCGCGa----CGCG----CAGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 37407 0.74 0.18641
Target:  5'- aCGUGCAUCGCGUcGCGCGgccguccUCGUCGu- -3'
miRNA:   3'- -GCAUGUAGCGCGaCGCGC-------AGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 34807 0.69 0.345304
Target:  5'- cCGUACAUCGacaacugGCUGCGCacgCGCCa-- -3'
miRNA:   3'- -GCAUGUAGCg------CGACGCGca-GCGGcuu -5'
24329 3' -57.7 NC_005263.2 + 32550 0.66 0.505207
Target:  5'- --gGCGUUcaGCGC-GCGCGUcugCGCCGAGa -3'
miRNA:   3'- gcaUGUAG--CGCGaCGCGCA---GCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 31254 0.66 0.536772
Target:  5'- ------cCGCGCgGCGCGgCGCCGGg -3'
miRNA:   3'- gcauguaGCGCGaCGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 30673 0.66 0.547449
Target:  5'- aGUGCAUCcUGCaUGCGCGggcagGCCGGc -3'
miRNA:   3'- gCAUGUAGcGCG-ACGCGCag---CGGCUu -5'
24329 3' -57.7 NC_005263.2 + 30347 0.66 0.515645
Target:  5'- gCGUGCcgagcgcggcCGCGCUGcCGCcggCGCCGAGu -3'
miRNA:   3'- -GCAUGua--------GCGCGAC-GCGca-GCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 29018 0.69 0.345304
Target:  5'- aGUGCGUUGCGCacCGCGaCGCCGu- -3'
miRNA:   3'- gCAUGUAGCGCGacGCGCaGCGGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.