miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24331 5' -58.5 NC_005264.1 + 76693 0.66 0.83514
Target:  5'- uGCCCAGCUugGCgcGGAGCGCgGCg- -3'
miRNA:   3'- gUGGGUCGGcaUGa-CCUCGCGaUGgc -5'
24331 5' -58.5 NC_005264.1 + 98472 0.66 0.83514
Target:  5'- aACCCGGCCGgcacGCgcgagGGcaucuccucAGCGCUACa- -3'
miRNA:   3'- gUGGGUCGGCa---UGa----CC---------UCGCGAUGgc -5'
24331 5' -58.5 NC_005264.1 + 138774 0.66 0.818583
Target:  5'- gCGCCUGGCCGUGCUGuuG-GCUGuguCCGc -3'
miRNA:   3'- -GUGGGUCGGCAUGACcuCgCGAU---GGC- -5'
24331 5' -58.5 NC_005264.1 + 24949 0.66 0.810057
Target:  5'- gCACaUguGCCGUACcaGGGCGCUgcGCCGa -3'
miRNA:   3'- -GUG-GguCGGCAUGacCUCGCGA--UGGC- -5'
24331 5' -58.5 NC_005264.1 + 157569 0.66 0.810057
Target:  5'- aCGCCacgaGGCCGgGCUuGGGCGCUuccCCGu -3'
miRNA:   3'- -GUGGg---UCGGCaUGAcCUCGCGAu--GGC- -5'
24331 5' -58.5 NC_005264.1 + 66067 0.66 0.810057
Target:  5'- aGCCCGGgaauaaguuucUCGUAgucuCUGGGGgGCUGCCc -3'
miRNA:   3'- gUGGGUC-----------GGCAU----GACCUCgCGAUGGc -5'
24331 5' -58.5 NC_005264.1 + 44631 0.67 0.792546
Target:  5'- uCACCgCGGCCGag--GGAGUGCUgauguagaagcuGCCGu -3'
miRNA:   3'- -GUGG-GUCGGCaugaCCUCGCGA------------UGGC- -5'
24331 5' -58.5 NC_005264.1 + 55135 0.67 0.792546
Target:  5'- aCACCCcGCCGUGCgcu-GUGCUGgCGc -3'
miRNA:   3'- -GUGGGuCGGCAUGaccuCGCGAUgGC- -5'
24331 5' -58.5 NC_005264.1 + 77970 0.67 0.792546
Target:  5'- cCugCCGGCgccgcgCGUACcGGAGCGggcgaUACCGa -3'
miRNA:   3'- -GugGGUCG------GCAUGaCCUCGCg----AUGGC- -5'
24331 5' -58.5 NC_005264.1 + 99771 0.67 0.783578
Target:  5'- gGCCCucGCCGaGCUGGAGaccgagaucaaGCgGCCGa -3'
miRNA:   3'- gUGGGu-CGGCaUGACCUCg----------CGaUGGC- -5'
24331 5' -58.5 NC_005264.1 + 104939 0.67 0.783578
Target:  5'- -cCCCAGCCGUGCca-AGCGCcgaGCCu -3'
miRNA:   3'- guGGGUCGGCAUGaccUCGCGa--UGGc -5'
24331 5' -58.5 NC_005264.1 + 70385 0.67 0.783578
Target:  5'- gGCUCGGUgGaGCUGGAGgGCgGCCu -3'
miRNA:   3'- gUGGGUCGgCaUGACCUCgCGaUGGc -5'
24331 5' -58.5 NC_005264.1 + 98980 0.67 0.746485
Target:  5'- ---aCGGCCGUugUGGAGCG--GCCu -3'
miRNA:   3'- guggGUCGGCAugACCUCGCgaUGGc -5'
24331 5' -58.5 NC_005264.1 + 799 0.68 0.736949
Target:  5'- gCGCuCCAGUacgGCUGGGuGCGCgGCCGg -3'
miRNA:   3'- -GUG-GGUCGgcaUGACCU-CGCGaUGGC- -5'
24331 5' -58.5 NC_005264.1 + 12531 0.68 0.727325
Target:  5'- gCAUCUAGCCGguaggaGCggGGGGCGUUcGCCGc -3'
miRNA:   3'- -GUGGGUCGGCa-----UGa-CCUCGCGA-UGGC- -5'
24331 5' -58.5 NC_005264.1 + 131558 0.68 0.727325
Target:  5'- gCAUCUAGCCGguaggaGCggGGGGCGUUcGCCGc -3'
miRNA:   3'- -GUGGGUCGGCa-----UGa-CCUCGCGA-UGGC- -5'
24331 5' -58.5 NC_005264.1 + 98669 0.68 0.717623
Target:  5'- gACCCAGU---GCUGGcGGCGCUugCa -3'
miRNA:   3'- gUGGGUCGgcaUGACC-UCGCGAugGc -5'
24331 5' -58.5 NC_005264.1 + 52425 0.69 0.678196
Target:  5'- gACCUGGCCGagaagUACUGGcucgAGC-CUGCCGa -3'
miRNA:   3'- gUGGGUCGGC-----AUGACC----UCGcGAUGGC- -5'
24331 5' -58.5 NC_005264.1 + 95434 0.69 0.648214
Target:  5'- aACCCAaaGCCGUcgUGGAauaCGCUACCGc -3'
miRNA:   3'- gUGGGU--CGGCAugACCUc--GCGAUGGC- -5'
24331 5' -58.5 NC_005264.1 + 48377 0.7 0.588118
Target:  5'- gGCgCAGCCGguagACUGGGGCGUcgGgCGg -3'
miRNA:   3'- gUGgGUCGGCa---UGACCUCGCGa-UgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.