miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 133967 0.67 0.697742
Target:  5'- uCUU-CGCGGUG-GCGuUCgCCGCGCGGu -3'
miRNA:   3'- -GAAcGUGCCGCgCGCuAG-GGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 101339 0.67 0.707397
Target:  5'- --cGCGCGGCGCuagcCGAgaCCGCGgGGc -3'
miRNA:   3'- gaaCGUGCCGCGc---GCUagGGCGCgCU- -5'
24335 3' -60.5 NC_005264.1 + 142967 0.66 0.739732
Target:  5'- --aGCGCGGcCGCgGCGGUCUCucgggcaugaggcggGCGUGGg -3'
miRNA:   3'- gaaCGUGCC-GCG-CGCUAGGG---------------CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 126300 0.66 0.754621
Target:  5'- --cGCuuuCgGGCGCGCGGccgauggcUCCUGCGCc- -3'
miRNA:   3'- gaaCGu--G-CCGCGCGCU--------AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 14548 0.68 0.648864
Target:  5'- --cGCAC-GCGCGCGGucuccagaaucUCCCGC-CGGg -3'
miRNA:   3'- gaaCGUGcCGCGCGCU-----------AGGGCGcGCU- -5'
24335 3' -60.5 NC_005264.1 + 3802 0.67 0.668505
Target:  5'- -cUGCGUGGCGgucCGCGAguucgggCCCGgGCGGg -3'
miRNA:   3'- gaACGUGCCGC---GCGCUa------GGGCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 39253 0.66 0.716992
Target:  5'- --gGCuCGGCuuGUGAUCCCgagacuugGCGCGAc -3'
miRNA:   3'- gaaCGuGCCGcgCGCUAGGG--------CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 48665 0.66 0.763798
Target:  5'- --gGCACGGgGgGCGAggagaUCUgGgCGCGAg -3'
miRNA:   3'- gaaCGUGCCgCgCGCU-----AGGgC-GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 114697 0.67 0.678289
Target:  5'- --aGCA-GGauuGCGCGGUCUCGUGCGc -3'
miRNA:   3'- gaaCGUgCCg--CGCGCUAGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 112268 0.66 0.763798
Target:  5'- --aGCGCcGCGUGCGcuUCCCGCacGCGc -3'
miRNA:   3'- gaaCGUGcCGCGCGCu-AGGGCG--CGCu -5'
24335 3' -60.5 NC_005264.1 + 20336 0.66 0.716992
Target:  5'- uCUUGCACGuuGC-CG-UUCCGCGCGc -3'
miRNA:   3'- -GAACGUGCcgCGcGCuAGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 30396 0.67 0.697742
Target:  5'- --gGCgGCGGCGguCGCGcgCCgGUGCGGa -3'
miRNA:   3'- gaaCG-UGCCGC--GCGCuaGGgCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 4453 0.66 0.726521
Target:  5'- --gGCcucUGGCuGCGCGAUUCUGgGCGGg -3'
miRNA:   3'- gaaCGu--GCCG-CGCGCUAGGGCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 39542 0.66 0.735974
Target:  5'- -cUGC-CGcCGCcccGCGGuUCCCGCGCGGc -3'
miRNA:   3'- gaACGuGCcGCG---CGCU-AGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 129032 0.66 0.745343
Target:  5'- cCUUGC-CGGCGaGcCGGUCCaaagcggcgUGCGCGGc -3'
miRNA:   3'- -GAACGuGCCGCgC-GCUAGG---------GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 115276 0.66 0.754621
Target:  5'- -cUGCAguauUGuaGCGCGAcaacgacgUCCCGCGCa- -3'
miRNA:   3'- gaACGU----GCcgCGCGCU--------AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 103143 0.68 0.609491
Target:  5'- --gGCGCGGCGCGCGGcgCaaaGCGUa- -3'
miRNA:   3'- gaaCGUGCCGCGCGCUa-Ggg-CGCGcu -5'
24335 3' -60.5 NC_005264.1 + 61919 0.68 0.648864
Target:  5'- --cGCACGG-GCGCcgccgCuuGCGCGAa -3'
miRNA:   3'- gaaCGUGCCgCGCGcua--GggCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 68435 0.67 0.658694
Target:  5'- --cGCGCaguccGCGcCGCGGUCUgCGCGCGGa -3'
miRNA:   3'- gaaCGUGc----CGC-GCGCUAGG-GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 33258 0.67 0.668505
Target:  5'- --aGCAgCGGCgaacGCGCGAUCC-GCGCc- -3'
miRNA:   3'- gaaCGU-GCCG----CGCGCUAGGgCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.