miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 48665 0.66 0.763798
Target:  5'- --gGCACGGgGgGCGAggagaUCUgGgCGCGAg -3'
miRNA:   3'- gaaCGUGCCgCgCGCU-----AGGgC-GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 20026 0.67 0.658694
Target:  5'- ---cCACGGCGCGCucgcaCCCGUGCa- -3'
miRNA:   3'- gaacGUGCCGCGCGcua--GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 112268 0.66 0.763798
Target:  5'- --aGCGCcGCGUGCGcuUCCCGCacGCGc -3'
miRNA:   3'- gaaCGUGcCGCGCGCu-AGGGCG--CGCu -5'
24335 3' -60.5 NC_005264.1 + 49342 0.66 0.763798
Target:  5'- -gUGUACGaGgGuCGCGGUuggcaCUCGCGCGAc -3'
miRNA:   3'- gaACGUGC-CgC-GCGCUA-----GGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 131597 0.71 0.431019
Target:  5'- -gUGUggagggaGCGGCGCGCGugggCgCGCGCGGa -3'
miRNA:   3'- gaACG-------UGCCGCGCGCua--GgGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 99908 0.73 0.36645
Target:  5'- --gGCGCGGCuugcggccGCGCaagCCCGCGCGGc -3'
miRNA:   3'- gaaCGUGCCG--------CGCGcuaGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 115276 0.66 0.754621
Target:  5'- -cUGCAguauUGuaGCGCGAcaacgacgUCCCGCGCa- -3'
miRNA:   3'- gaACGU----GCcgCGCGCU--------AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 26376 0.69 0.5801
Target:  5'- -cUGCGCGGCGC-CG-UCUCugaGCGCGGc -3'
miRNA:   3'- gaACGUGCCGCGcGCuAGGG---CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 103143 0.68 0.609491
Target:  5'- --gGCGCGGCGCGCGGcgCaaaGCGUa- -3'
miRNA:   3'- gaaCGUGCCGCGCGCUa-Ggg-CGCGcu -5'
24335 3' -60.5 NC_005264.1 + 61919 0.68 0.648864
Target:  5'- --cGCACGG-GCGCcgccgCuuGCGCGAa -3'
miRNA:   3'- gaaCGUGCCgCGCGcua--GggCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 40390 0.67 0.662621
Target:  5'- --aGCGCGG-GCGCGGcccuacgucccuccCCCGCGCa- -3'
miRNA:   3'- gaaCGUGCCgCGCGCUa-------------GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 63697 0.72 0.40654
Target:  5'- --gGCGCGGCaa--GGUCCCGUGCGAg -3'
miRNA:   3'- gaaCGUGCCGcgcgCUAGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 114697 0.67 0.678289
Target:  5'- --aGCA-GGauuGCGCGGUCUCGUGCGc -3'
miRNA:   3'- gaaCGUgCCg--CGCGCUAGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 133967 0.67 0.697742
Target:  5'- uCUU-CGCGGUG-GCGuUCgCCGCGCGGu -3'
miRNA:   3'- -GAAcGUGCCGCgCGCuAG-GGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 101339 0.67 0.707397
Target:  5'- --cGCGCGGCGCuagcCGAgaCCGCGgGGc -3'
miRNA:   3'- gaaCGUGCCGCGc---GCUagGGCGCgCU- -5'
24335 3' -60.5 NC_005264.1 + 4453 0.66 0.726521
Target:  5'- --gGCcucUGGCuGCGCGAUUCUGgGCGGg -3'
miRNA:   3'- gaaCGu--GCCG-CGCGCUAGGGCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 39542 0.66 0.735974
Target:  5'- -cUGC-CGcCGCcccGCGGuUCCCGCGCGGc -3'
miRNA:   3'- gaACGuGCcGCG---CGCU-AGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 129032 0.66 0.745343
Target:  5'- cCUUGC-CGGCGaGcCGGUCCaaagcggcgUGCGCGGc -3'
miRNA:   3'- -GAACGuGCCGCgC-GCUAGG---------GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 66503 0.7 0.50364
Target:  5'- -cUGCGCGGCGCGCucGAcgagcucgcUUUCGCGCa- -3'
miRNA:   3'- gaACGUGCCGCGCG--CU---------AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 58119 0.67 0.658694
Target:  5'- --gGCGCuGCuGCGCGAcCUCGCGCa- -3'
miRNA:   3'- gaaCGUGcCG-CGCGCUaGGGCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.