miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 3' -56.7 NC_005264.1 + 122636 0.66 0.894661
Target:  5'- -aCCGCCGCggggGGCCgcgaggGCgggCGCgCUGACAu -3'
miRNA:   3'- caGGUGGUG----CCGGa-----UGa--GUG-GACUGU- -5'
24336 3' -56.7 NC_005264.1 + 20034 0.66 0.894661
Target:  5'- aGUCCuACCAUGGCCUgGCaugUCGCCacGCGg -3'
miRNA:   3'- -CAGG-UGGUGCCGGA-UG---AGUGGacUGU- -5'
24336 3' -56.7 NC_005264.1 + 110719 0.66 0.894661
Target:  5'- cUCCAUCACcggaGGCCUccuGCUCGCUUcGCGg -3'
miRNA:   3'- cAGGUGGUG----CCGGA---UGAGUGGAcUGU- -5'
24336 3' -56.7 NC_005264.1 + 3609 0.66 0.894661
Target:  5'- -aCCGCCGCggggGGCCgcgaggGCgggCGCgCUGACAu -3'
miRNA:   3'- caGGUGGUG----CCGGa-----UGa--GUG-GACUGU- -5'
24336 3' -56.7 NC_005264.1 + 57605 0.66 0.894661
Target:  5'- cGUUUgcuCCGCGGCCUGCUCGCagucGuACAc -3'
miRNA:   3'- -CAGGu--GGUGCCGGAUGAGUGga--C-UGU- -5'
24336 3' -56.7 NC_005264.1 + 131330 0.66 0.881067
Target:  5'- -cCCGCC-CGaGCCUggaGC-CGCCUGACc -3'
miRNA:   3'- caGGUGGuGC-CGGA---UGaGUGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 12303 0.66 0.881067
Target:  5'- -cCCGCC-CGaGCCUggaGC-CGCCUGACc -3'
miRNA:   3'- caGGUGGuGC-CGGA---UGaGUGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 91738 0.66 0.881067
Target:  5'- -cUCACCAgGGCCgaggGCggCugUUGACAa -3'
miRNA:   3'- caGGUGGUgCCGGa---UGa-GugGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 60621 0.66 0.881067
Target:  5'- aGUUCugUGCGGCCcuauCUCGCgaGGCGa -3'
miRNA:   3'- -CAGGugGUGCCGGau--GAGUGgaCUGU- -5'
24336 3' -56.7 NC_005264.1 + 87031 0.66 0.879659
Target:  5'- -aCCACCGCGcGCCUACggacggcgacgACCUGGa- -3'
miRNA:   3'- caGGUGGUGC-CGGAUGag---------UGGACUgu -5'
24336 3' -56.7 NC_005264.1 + 73664 0.66 0.873938
Target:  5'- -gCCGCCgggACGacCCUACUUGCCUGGCc -3'
miRNA:   3'- caGGUGG---UGCc-GGAUGAGUGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 98154 0.66 0.866595
Target:  5'- -gCgAgCACGGCCUGCcCGCC-GGCAg -3'
miRNA:   3'- caGgUgGUGCCGGAUGaGUGGaCUGU- -5'
24336 3' -56.7 NC_005264.1 + 51102 0.66 0.866595
Target:  5'- -gCCgguGCUGCGGUCUGCUCgcGCCUcGACGc -3'
miRNA:   3'- caGG---UGGUGCCGGAUGAG--UGGA-CUGU- -5'
24336 3' -56.7 NC_005264.1 + 136692 0.66 0.866595
Target:  5'- aGUCCucGCCGCGGCCUGggaCAUCaUGGCc -3'
miRNA:   3'- -CAGG--UGGUGCCGGAUga-GUGG-ACUGu -5'
24336 3' -56.7 NC_005264.1 + 20020 0.67 0.859042
Target:  5'- gGUCUACCACGGCgcGCUCGCacccguGCAg -3'
miRNA:   3'- -CAGGUGGUGCCGgaUGAGUGgac---UGU- -5'
24336 3' -56.7 NC_005264.1 + 69848 0.67 0.856736
Target:  5'- -cCCGCUACGGCCggUGCUgCGgcgcguggugauccCCUGGCAu -3'
miRNA:   3'- caGGUGGUGCCGG--AUGA-GU--------------GGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 144234 0.67 0.851285
Target:  5'- cGUCCGCUGCGGUCUucuccggcugcuACcgCACC-GACAc -3'
miRNA:   3'- -CAGGUGGUGCCGGA------------UGa-GUGGaCUGU- -5'
24336 3' -56.7 NC_005264.1 + 66830 0.67 0.843332
Target:  5'- -gCCACCuacuucGCGGCCUGCaUCACUcuagaUGAUg -3'
miRNA:   3'- caGGUGG------UGCCGGAUG-AGUGG-----ACUGu -5'
24336 3' -56.7 NC_005264.1 + 3165 0.67 0.835187
Target:  5'- -aCCACCGaacgcguccuUGGCCUugUCaaagaACCUGGCc -3'
miRNA:   3'- caGGUGGU----------GCCGGAugAG-----UGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 126412 0.67 0.818357
Target:  5'- cGUCU-CCGCGGCCUGCaggUACUUGGg- -3'
miRNA:   3'- -CAGGuGGUGCCGGAUGa--GUGGACUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.