miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 5' -55.9 NC_005264.1 + 50384 0.66 0.930741
Target:  5'- -aCACaCGGGcAAGAUGaUgAUGAGGGGg -3'
miRNA:   3'- uaGUG-GUCCuUUCUGC-GgUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 45294 0.66 0.930741
Target:  5'- gAUUuCgAGGAaagacGAGACGCCAgGAuuaGGGGa -3'
miRNA:   3'- -UAGuGgUCCU-----UUCUGCGGUgCU---CCCC- -5'
24336 5' -55.9 NC_005264.1 + 49603 0.66 0.9255
Target:  5'- --gACCAGGAcgacggGGGGCGCU-CGGuGGGGu -3'
miRNA:   3'- uagUGGUCCU------UUCUGCGGuGCU-CCCC- -5'
24336 5' -55.9 NC_005264.1 + 53860 0.66 0.920022
Target:  5'- --gGCUAGGAGAGACGCguCGuaccccguguAGGGu -3'
miRNA:   3'- uagUGGUCCUUUCUGCGguGC----------UCCCc -5'
24336 5' -55.9 NC_005264.1 + 120634 0.66 0.920022
Target:  5'- --gGCCAGGGAuacgGGACGCCG-GuGGGc -3'
miRNA:   3'- uagUGGUCCUU----UCUGCGGUgCuCCCc -5'
24336 5' -55.9 NC_005264.1 + 1607 0.66 0.920022
Target:  5'- --gGCCAGGGAuacgGGACGCCG-GuGGGc -3'
miRNA:   3'- uagUGGUCCUU----UCUGCGGUgCuCCCc -5'
24336 5' -55.9 NC_005264.1 + 154077 0.66 0.919462
Target:  5'- -cCGCCGuagaggcucauauGGaAGAGGCGCUuaggaACGGGGGGc -3'
miRNA:   3'- uaGUGGU-------------CC-UUUCUGCGG-----UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 128526 0.66 0.913724
Target:  5'- aGUCAgccagcgUCAGGcgcGGCGCCcuCGAGGGGc -3'
miRNA:   3'- -UAGU-------GGUCCuuuCUGCGGu-GCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 9499 0.66 0.913724
Target:  5'- aGUCAgccagcgUCAGGcgcGGCGCCcuCGAGGGGc -3'
miRNA:   3'- -UAGU-------GGUCCuuuCUGCGGu-GCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 66677 0.66 0.908358
Target:  5'- uUCAa-GGGAAcuaccGGCGCCggGCGGGGGGc -3'
miRNA:   3'- uAGUggUCCUUu----CUGCGG--UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 46397 0.66 0.902175
Target:  5'- gGUCGUCAGGGccAGGucCGCCGCGAGGc- -3'
miRNA:   3'- -UAGUGGUCCU--UUCu-GCGGUGCUCCcc -5'
24336 5' -55.9 NC_005264.1 + 160657 0.67 0.895761
Target:  5'- -gCGCCGgcaauGGAGGGgcaACGCCGCGGGGa- -3'
miRNA:   3'- uaGUGGU-----CCUUUC---UGCGGUGCUCCcc -5'
24336 5' -55.9 NC_005264.1 + 109511 0.67 0.895761
Target:  5'- --aGCCAGGu---ACGCCGuuacaucauuCGAGGGGg -3'
miRNA:   3'- uagUGGUCCuuucUGCGGU----------GCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 138463 0.67 0.893792
Target:  5'- -cCGCCGGGGGAGccgcgaagccggucAUGCCagaGCGGcGGGGa -3'
miRNA:   3'- uaGUGGUCCUUUC--------------UGCGG---UGCU-CCCC- -5'
24336 5' -55.9 NC_005264.1 + 33950 0.67 0.889119
Target:  5'- -gCGCCGGGAcc-GCGCC-CGAuaGGGGc -3'
miRNA:   3'- uaGUGGUCCUuucUGCGGuGCU--CCCC- -5'
24336 5' -55.9 NC_005264.1 + 35959 0.67 0.889119
Target:  5'- -gCGCCGacgauGGcGAuuCGCCugGAGGGGg -3'
miRNA:   3'- uaGUGGU-----CCuUUcuGCGGugCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 152977 0.67 0.889119
Target:  5'- -gCGCCGGGAcc-GCGCC-CGAuaGGGGc -3'
miRNA:   3'- uaGUGGUCCUuucUGCGGuGCU--CCCC- -5'
24336 5' -55.9 NC_005264.1 + 52673 0.67 0.882252
Target:  5'- --uGCCAGGAuAGGCcccaaaGCCGCGGcGGGu -3'
miRNA:   3'- uagUGGUCCUuUCUG------CGGUGCUcCCC- -5'
24336 5' -55.9 NC_005264.1 + 162461 0.67 0.882252
Target:  5'- -aCuCCAGGAcgcGAcCGCCAgaGAGGGGg -3'
miRNA:   3'- uaGuGGUCCUuu-CU-GCGGUg-CUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 124060 0.67 0.882252
Target:  5'- cGUCACCGGGAcgAGGcACGUacccuuCugGcAGGGGu -3'
miRNA:   3'- -UAGUGGUCCU--UUC-UGCG------GugC-UCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.