miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24337 3' -56.6 NC_005264.1 + 43166 0.66 0.905298
Target:  5'- gGGGGGGCgcgugaGCCUCUaUCGCGcugccuGCGACgCGg -3'
miRNA:   3'- gUCCCUCG------UGGAGG-AGCGU------UGUUG-GC- -5'
24337 3' -56.6 NC_005264.1 + 59569 0.66 0.905298
Target:  5'- uCGGGGcuuAGgACCUCCgCGCAGaagaaGGCCa -3'
miRNA:   3'- -GUCCC---UCgUGGAGGaGCGUUg----UUGGc -5'
24337 3' -56.6 NC_005264.1 + 162193 0.66 0.905298
Target:  5'- gGGGGGGCgcgugaGCCUCUaUCGCGcugccuGCGACgCGg -3'
miRNA:   3'- gUCCCUCG------UGGAGG-AGCGU------UGUUG-GC- -5'
24337 3' -56.6 NC_005264.1 + 10292 0.66 0.899013
Target:  5'- gAGGGAuuaGCucGCCUaCCgggCGCAGCGACgCGc -3'
miRNA:   3'- gUCCCU---CG--UGGA-GGa--GCGUUGUUG-GC- -5'
24337 3' -56.6 NC_005264.1 + 4687 0.66 0.899013
Target:  5'- uCGGGGcgaguGGCGCCgcgUCCaCGaCAGCAGCUGg -3'
miRNA:   3'- -GUCCC-----UCGUGG---AGGaGC-GUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 123714 0.66 0.899013
Target:  5'- uCGGGGcgaguGGCGCCgcgUCCaCGaCAGCAGCUGg -3'
miRNA:   3'- -GUCCC-----UCGUGG---AGGaGC-GUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 129319 0.66 0.899013
Target:  5'- gAGGGAuuaGCucGCCUaCCgggCGCAGCGACgCGc -3'
miRNA:   3'- gUCCCU---CG--UGGA-GGa--GCGUUGUUG-GC- -5'
24337 3' -56.6 NC_005264.1 + 120013 0.66 0.899013
Target:  5'- gCAGGuGGGCcucCCcCCUCGCG--GACCGg -3'
miRNA:   3'- -GUCC-CUCGu--GGaGGAGCGUugUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 122659 0.66 0.892499
Target:  5'- -cGGGcGCGCUgacauUCgUCGCGAUGGCCGc -3'
miRNA:   3'- guCCCuCGUGG-----AGgAGCGUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 3632 0.66 0.892499
Target:  5'- -cGGGcGCGCUgacauUCgUCGCGAUGGCCGc -3'
miRNA:   3'- guCCCuCGUGG-----AGgAGCGUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 14638 0.66 0.88576
Target:  5'- gCAGGcGAGCcucaauUC-CCUCGCGGCAACgGc -3'
miRNA:   3'- -GUCC-CUCGu-----GGaGGAGCGUUGUUGgC- -5'
24337 3' -56.6 NC_005264.1 + 58113 0.66 0.88576
Target:  5'- gUAGGcGGCGCUgcugcgcgaCCUCGC-GCAGCCGu -3'
miRNA:   3'- -GUCCcUCGUGGa--------GGAGCGuUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 159570 0.66 0.88576
Target:  5'- cCAGGGAcguggcgcuGCGgCUCCUggaGCGACAGCa- -3'
miRNA:   3'- -GUCCCU---------CGUgGAGGAg--CGUUGUUGgc -5'
24337 3' -56.6 NC_005264.1 + 40543 0.66 0.88576
Target:  5'- cCAGGGAcguggcgcuGCGgCUCCUggaGCGACAGCa- -3'
miRNA:   3'- -GUCCCU---------CGUgGAGGAg--CGUUGUUGgc -5'
24337 3' -56.6 NC_005264.1 + 76168 0.66 0.88576
Target:  5'- -cGGGuGCACUUCCaaUUGCAAgAACgGg -3'
miRNA:   3'- guCCCuCGUGGAGG--AGCGUUgUUGgC- -5'
24337 3' -56.6 NC_005264.1 + 128709 0.66 0.878799
Target:  5'- gGGGGAggcgggcucGCGCCUCgaCGCuguuuCGGCCGc -3'
miRNA:   3'- gUCCCU---------CGUGGAGgaGCGuu---GUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 14372 0.66 0.871621
Target:  5'- uCAuGGAGCGCUUcauucCCUCGCGGgcGCCGg -3'
miRNA:   3'- -GUcCCUCGUGGA-----GGAGCGUUguUGGC- -5'
24337 3' -56.6 NC_005264.1 + 66722 0.66 0.870892
Target:  5'- cCGGGGAGCaacaagcGCCggcgCCUaaacCGCGGCAACa- -3'
miRNA:   3'- -GUCCCUCG-------UGGa---GGA----GCGUUGUUGgc -5'
24337 3' -56.6 NC_005264.1 + 30522 0.67 0.864232
Target:  5'- cCGGGGAGCuccacgACCcgCCUCGCuggcGCgAACCc -3'
miRNA:   3'- -GUCCCUCG------UGGa-GGAGCGu---UG-UUGGc -5'
24337 3' -56.6 NC_005264.1 + 3723 0.67 0.864232
Target:  5'- gCGGGcGGGCuucuCCgacgUCUCGCGAUcGCCGg -3'
miRNA:   3'- -GUCC-CUCGu---GGa---GGAGCGUUGuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.