miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24337 3' -56.6 NC_005264.1 + 159570 0.66 0.88576
Target:  5'- cCAGGGAcguggcgcuGCGgCUCCUggaGCGACAGCa- -3'
miRNA:   3'- -GUCCCU---------CGUgGAGGAg--CGUUGUUGgc -5'
24337 3' -56.6 NC_005264.1 + 157388 0.67 0.848839
Target:  5'- gCGGGGcgguuAGgACCUCCUCcggcgagaGCGGCGacGCCGa -3'
miRNA:   3'- -GUCCC-----UCgUGGAGGAG--------CGUUGU--UGGC- -5'
24337 3' -56.6 NC_005264.1 + 157967 0.67 0.848839
Target:  5'- --cGGAGaccccuauCUUCCUCGCAGCGugGCCGa -3'
miRNA:   3'- gucCCUCgu------GGAGGAGCGUUGU--UGGC- -5'
24337 3' -56.6 NC_005264.1 + 3723 0.67 0.864232
Target:  5'- gCGGGcGGGCuucuCCgacgUCUCGCGAUcGCCGg -3'
miRNA:   3'- -GUCC-CUCGu---GGa---GGAGCGUUGuUGGC- -5'
24337 3' -56.6 NC_005264.1 + 149549 0.67 0.864232
Target:  5'- cCGGGGAGCuccacgACCcgCCUCGCuggcGCgAACCc -3'
miRNA:   3'- -GUCCCUCG------UGGa-GGAGCGu---UG-UUGGc -5'
24337 3' -56.6 NC_005264.1 + 14372 0.66 0.871621
Target:  5'- uCAuGGAGCGCUUcauucCCUCGCGGgcGCCGg -3'
miRNA:   3'- -GUcCCUCGUGGA-----GGAGCGUUguUGGC- -5'
24337 3' -56.6 NC_005264.1 + 128709 0.66 0.878799
Target:  5'- gGGGGAggcgggcucGCGCCUCgaCGCuguuuCGGCCGc -3'
miRNA:   3'- gUCCCU---------CGUGGAGgaGCGuu---GUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 14638 0.66 0.88576
Target:  5'- gCAGGcGAGCcucaauUC-CCUCGCGGCAACgGc -3'
miRNA:   3'- -GUCC-CUCGu-----GGaGGAGCGUUGUUGgC- -5'
24337 3' -56.6 NC_005264.1 + 58113 0.66 0.88576
Target:  5'- gUAGGcGGCGCUgcugcgcgaCCUCGC-GCAGCCGu -3'
miRNA:   3'- -GUCCcUCGUGGa--------GGAGCGuUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 156606 0.67 0.832671
Target:  5'- gAGGcGGCAag-UCUCGCGGCGGCCGc -3'
miRNA:   3'- gUCCcUCGUggaGGAGCGUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 106750 0.68 0.815783
Target:  5'- gGGGGAGcCGCCUguuucCCUCGUccuACGGCUa -3'
miRNA:   3'- gUCCCUC-GUGGA-----GGAGCGu--UGUUGGc -5'
24337 3' -56.6 NC_005264.1 + 131773 0.68 0.81492
Target:  5'- gAGGGAGgcucgcuCGCCUgCCgucCGCAacGCAGCCGc -3'
miRNA:   3'- gUCCCUC-------GUGGA-GGa--GCGU--UGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 120117 0.72 0.601832
Target:  5'- gCGGGGAGaACCU-CUCGCAGCucuACCu -3'
miRNA:   3'- -GUCCCUCgUGGAgGAGCGUUGu--UGGc -5'
24337 3' -56.6 NC_005264.1 + 86847 0.7 0.672895
Target:  5'- cUAGGGGGCGCCagCUaGCGGCGugUGg -3'
miRNA:   3'- -GUCCCUCGUGGagGAgCGUUGUugGC- -5'
24337 3' -56.6 NC_005264.1 + 36379 0.7 0.682981
Target:  5'- gCGGGGAGUAUCUCCgCGCuagGCG-CCa -3'
miRNA:   3'- -GUCCCUCGUGGAGGaGCGu--UGUuGGc -5'
24337 3' -56.6 NC_005264.1 + 123020 0.7 0.711965
Target:  5'- gCAGGGcGGCacauGCCUCCUCGCccaccaggggcuuGGCgGGCCGa -3'
miRNA:   3'- -GUCCC-UCG----UGGAGGAGCG-------------UUG-UUGGC- -5'
24337 3' -56.6 NC_005264.1 + 28031 0.7 0.712956
Target:  5'- -cGGGAGguCUUCCggcgcgCGCGAC-GCCGg -3'
miRNA:   3'- guCCCUCguGGAGGa-----GCGUUGuUGGC- -5'
24337 3' -56.6 NC_005264.1 + 154609 0.69 0.761434
Target:  5'- gGGGGAGCugCUgCg-GCuuCGGCCGa -3'
miRNA:   3'- gUCCCUCGugGAgGagCGuuGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 133668 0.68 0.789237
Target:  5'- uGGGGAGCuagaggaacGCCUgCUCGCcGCGguccuuGCCGc -3'
miRNA:   3'- gUCCCUCG---------UGGAgGAGCGuUGU------UGGC- -5'
24337 3' -56.6 NC_005264.1 + 20253 0.68 0.807088
Target:  5'- gCAGGGguugcGGCGCggCCUCGCGGagggGACCGu -3'
miRNA:   3'- -GUCCC-----UCGUGgaGGAGCGUUg---UUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.