miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24337 3' -56.6 NC_005264.1 + 59569 0.66 0.905298
Target:  5'- uCGGGGcuuAGgACCUCCgCGCAGaagaaGGCCa -3'
miRNA:   3'- -GUCCC---UCgUGGAGGaGCGUUg----UUGGc -5'
24337 3' -56.6 NC_005264.1 + 120146 0.69 0.770827
Target:  5'- --cGGAGCGCCggCCg-GCGAUGACCGa -3'
miRNA:   3'- gucCCUCGUGGa-GGagCGUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 35582 0.69 0.761434
Target:  5'- gGGGGAGCugCUgCg-GCuuCGGCCGa -3'
miRNA:   3'- gUCCCUCGugGAgGagCGuuGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 159034 1.07 0.003361
Target:  5'- gCAGGGAGCACCUCCUCGCAACAACCGc -3'
miRNA:   3'- -GUCCCUCGUGGAGGAGCGUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 3632 0.66 0.892499
Target:  5'- -cGGGcGCGCUgacauUCgUCGCGAUGGCCGc -3'
miRNA:   3'- guCCCuCGUGG-----AGgAGCGUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 40543 0.66 0.88576
Target:  5'- cCAGGGAcguggcgcuGCGgCUCCUggaGCGACAGCa- -3'
miRNA:   3'- -GUCCCU---------CGUgGAGGAg--CGUUGUUGgc -5'
24337 3' -56.6 NC_005264.1 + 66722 0.66 0.870892
Target:  5'- cCGGGGAGCaacaagcGCCggcgCCUaaacCGCGGCAACa- -3'
miRNA:   3'- -GUCCCUCG-------UGGa---GGA----GCGUUGUUGgc -5'
24337 3' -56.6 NC_005264.1 + 30522 0.67 0.864232
Target:  5'- cCGGGGAGCuccacgACCcgCCUCGCuggcGCgAACCc -3'
miRNA:   3'- -GUCCCUCG------UGGa-GGAGCGu---UG-UUGGc -5'
24337 3' -56.6 NC_005264.1 + 38361 0.67 0.848839
Target:  5'- gCGGGGcgguuAGgACCUCCUCcggcgagaGCGGCGacGCCGa -3'
miRNA:   3'- -GUCCC-----UCgUGGAGGAG--------CGUUGU--UGGC- -5'
24337 3' -56.6 NC_005264.1 + 45409 0.68 0.798236
Target:  5'- gAGGGcGGCGCC-CUgcgcgcCGCGACAGCCc -3'
miRNA:   3'- gUCCC-UCGUGGaGGa-----GCGUUGUUGGc -5'
24337 3' -56.6 NC_005264.1 + 85442 0.68 0.815783
Target:  5'- aCAGGGAGCGCUUgCCggCGUcugGGCCGa -3'
miRNA:   3'- -GUCCCUCGUGGA-GGa-GCGuugUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 38940 0.67 0.848839
Target:  5'- --cGGAGaccccuauCUUCCUCGCAGCGugGCCGa -3'
miRNA:   3'- gucCCUCgu------GGAGGAGCGUUGU--UGGC- -5'
24337 3' -56.6 NC_005264.1 + 43166 0.66 0.905298
Target:  5'- gGGGGGGCgcgugaGCCUCUaUCGCGcugccuGCGACgCGg -3'
miRNA:   3'- gUCCCUCG------UGGAGG-AGCGU------UGUUG-GC- -5'
24337 3' -56.6 NC_005264.1 + 17830 0.68 0.815783
Target:  5'- gAGGGGGCuagauCCUCCaucUCGCGcgcgcuguuCGACCGc -3'
miRNA:   3'- gUCCCUCGu----GGAGG---AGCGUu--------GUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 4687 0.66 0.899013
Target:  5'- uCGGGGcgaguGGCGCCgcgUCCaCGaCAGCAGCUGg -3'
miRNA:   3'- -GUCCC-----UCGUGG---AGGaGC-GUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 987 0.67 0.856636
Target:  5'- gCAGGuGGGCcuCCcCCUCGCG--GACCGg -3'
miRNA:   3'- -GUCC-CUCGu-GGaGGAGCGUugUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 12747 0.68 0.81492
Target:  5'- gAGGGAGgcucgcuCGCCUgCCgucCGCAacGCAGCCGc -3'
miRNA:   3'- gUCCCUC-------GUGGA-GGa--GCGU--UGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 29681 0.69 0.770827
Target:  5'- uCAGGGAGCGuCCagCCUCGU--CAuCCGg -3'
miRNA:   3'- -GUCCCUCGU-GGa-GGAGCGuuGUuGGC- -5'
24337 3' -56.6 NC_005264.1 + 10292 0.66 0.899013
Target:  5'- gAGGGAuuaGCucGCCUaCCgggCGCAGCGACgCGc -3'
miRNA:   3'- gUCCCU---CG--UGGA-GGa--GCGUUGUUG-GC- -5'
24337 3' -56.6 NC_005264.1 + 76168 0.66 0.88576
Target:  5'- -cGGGuGCACUUCCaaUUGCAAgAACgGg -3'
miRNA:   3'- guCCCuCGUGGAGG--AGCGUUgUUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.