Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24337 | 3' | -56.6 | NC_005264.1 | + | 159034 | 1.07 | 0.003361 |
Target: 5'- gCAGGGAGCACCUCCUCGCAACAACCGc -3' miRNA: 3'- -GUCCCUCGUGGAGGAGCGUUGUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 127334 | 0.73 | 0.502662 |
Target: 5'- -cGGGGGCACCUgCgcCGCGGCGucGCCGu -3' miRNA: 3'- guCCCUCGUGGAgGa-GCGUUGU--UGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 8307 | 0.73 | 0.502662 |
Target: 5'- -cGGGGGCACCUgCgcCGCGGCGucGCCGu -3' miRNA: 3'- guCCCUCGUGGAgGa-GCGUUGU--UGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 58539 | 0.72 | 0.581616 |
Target: 5'- -uGGGAauuuGCACCUCCUC-CGGcCGACCGc -3' miRNA: 3'- guCCCU----CGUGGAGGAGcGUU-GUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 1090 | 0.72 | 0.601832 |
Target: 5'- gCGGGGAGaACCU-CUCGCAGCucuACCu -3' miRNA: 3'- -GUCCCUCgUGGAgGAGCGUUGu--UGGc -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 120117 | 0.72 | 0.601832 |
Target: 5'- gCGGGGAGaACCU-CUCGCAGCucuACCu -3' miRNA: 3'- -GUCCCUCgUGGAgGAGCGUUGu--UGGc -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 128274 | 0.71 | 0.642473 |
Target: 5'- --uGGAGUAUUUCUUCGCGuCAACCGg -3' miRNA: 3'- gucCCUCGUGGAGGAGCGUuGUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 86847 | 0.7 | 0.672895 |
Target: 5'- cUAGGGGGCGCCagCUaGCGGCGugUGg -3' miRNA: 3'- -GUCCCUCGUGGagGAgCGUUGUugGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 36379 | 0.7 | 0.682981 |
Target: 5'- gCGGGGAGUAUCUCCgCGCuagGCG-CCa -3' miRNA: 3'- -GUCCCUCGUGGAGGaGCGu--UGUuGGc -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 123020 | 0.7 | 0.711965 |
Target: 5'- gCAGGGcGGCacauGCCUCCUCGCccaccaggggcuuGGCgGGCCGa -3' miRNA: 3'- -GUCCC-UCG----UGGAGGAGCG-------------UUG-UUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 3993 | 0.7 | 0.711965 |
Target: 5'- gCAGGGcGGCacauGCCUCCUCGCccaccaggggcuuGGCgGGCCGa -3' miRNA: 3'- -GUCCC-UCG----UGGAGGAGCG-------------UUG-UUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 28031 | 0.7 | 0.712956 |
Target: 5'- -cGGGAGguCUUCCggcgcgCGCGAC-GCCGg -3' miRNA: 3'- guCCCUCguGGAGGa-----GCGUUGuUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 35582 | 0.69 | 0.761434 |
Target: 5'- gGGGGAGCugCUgCg-GCuuCGGCCGa -3' miRNA: 3'- gUCCCUCGugGAgGagCGuuGUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 29681 | 0.69 | 0.770827 |
Target: 5'- uCAGGGAGCGuCCagCCUCGU--CAuCCGg -3' miRNA: 3'- -GUCCCUCGU-GGa-GGAGCGuuGUuGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 120146 | 0.69 | 0.770827 |
Target: 5'- --cGGAGCGCCggCCg-GCGAUGACCGa -3' miRNA: 3'- gucCCUCGUGGa-GGagCGUUGUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 132942 | 0.69 | 0.732614 |
Target: 5'- aCGGGGuAGCGCCgcacgCCuUCGCGGCAAgUa -3' miRNA: 3'- -GUCCC-UCGUGGa----GG-AGCGUUGUUgGc -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 102205 | 0.69 | 0.741353 |
Target: 5'- gCGGGGAucaagcuGCugCUCCUgCGCGA--GCCGg -3' miRNA: 3'- -GUCCCU-------CGugGAGGA-GCGUUguUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 116251 | 0.69 | 0.761434 |
Target: 5'- gCAGGGAcagaGCCUCCgcacgCGCGACuuggaAGCCGu -3' miRNA: 3'- -GUCCCUcg--UGGAGGa----GCGUUG-----UUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 154609 | 0.69 | 0.761434 |
Target: 5'- gGGGGAGCugCUgCg-GCuuCGGCCGa -3' miRNA: 3'- gUCCCUCGugGAgGagCGuuGUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 133668 | 0.68 | 0.789237 |
Target: 5'- uGGGGAGCuagaggaacGCCUgCUCGCcGCGguccuuGCCGc -3' miRNA: 3'- gUCCCUCG---------UGGAgGAGCGuUGU------UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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