miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 141466 0.67 0.802897
Target:  5'- aGCgGCGGGGCCUcUUUCCaccGGCCg -3'
miRNA:   3'- gCGgCGUCUUGGGcAGAGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 21162 0.67 0.802034
Target:  5'- uCGCCGUAGucACCCGaucccagCUCCGaUGuagcgacaucgucGGCCg -3'
miRNA:   3'- -GCGGCGUCu-UGGGCa------GAGGC-AU-------------CCGG- -5'
24340 5' -58.6 NC_005264.1 + 42620 0.67 0.797698
Target:  5'- gGCCGCGGAcGCCCGguccgCUgCGUAcccccaucgcgcgccGGCa -3'
miRNA:   3'- gCGGCGUCU-UGGGCa----GAgGCAU---------------CCGg -5'
24340 5' -58.6 NC_005264.1 + 118815 0.67 0.794203
Target:  5'- gGCCGUcGAugU--UCUCCGUAuGGCCc -3'
miRNA:   3'- gCGGCGuCUugGgcAGAGGCAU-CCGG- -5'
24340 5' -58.6 NC_005264.1 + 161647 0.67 0.791568
Target:  5'- gGCCGCGGAcGCCCGguccgCUgCGUAccccaucgcgcgccGGCa -3'
miRNA:   3'- gCGGCGUCU-UGGGCa----GAgGCAU--------------CCGg -5'
24340 5' -58.6 NC_005264.1 + 146487 0.67 0.785373
Target:  5'- ---aGCAGAAgCCuaugGUCUCCcUGGGCCg -3'
miRNA:   3'- gcggCGUCUUgGG----CAGAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 82175 0.67 0.785373
Target:  5'- uGCCGUgcGGCCgGUCggCGgcGGCCa -3'
miRNA:   3'- gCGGCGucUUGGgCAGagGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 92566 0.67 0.785373
Target:  5'- aGuuGCGGGACUCGa--CCG-AGGCCu -3'
miRNA:   3'- gCggCGUCUUGGGCagaGGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 154617 0.67 0.784482
Target:  5'- uGCUGCGGcuucggccgauGGCCgCGUCUCCGUguccccgGGGUUc -3'
miRNA:   3'- gCGGCGUC-----------UUGG-GCAGAGGCA-------UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 35590 0.67 0.784482
Target:  5'- uGCUGCGGcuucggccgauGGCCgCGUCUCCGUguccccgGGGUUc -3'
miRNA:   3'- gCGGCGUC-----------UUGG-GCAGAGGCA-------UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 142596 0.67 0.776413
Target:  5'- gCGCCGCAaccccugcccACCCGUCaCgCGcgGGGCCa -3'
miRNA:   3'- -GCGGCGUcu--------UGGGCAGaG-GCa-UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 6237 0.67 0.776413
Target:  5'- cCGCCGCGaGACuugCCGcCUCCGUcgcGGUCg -3'
miRNA:   3'- -GCGGCGUcUUG---GGCaGAGGCAu--CCGG- -5'
24340 5' -58.6 NC_005264.1 + 104209 0.67 0.776413
Target:  5'- uCGCCGCAGAGCaCgCGUCgCac-GGGUCa -3'
miRNA:   3'- -GCGGCGUCUUG-G-GCAGaGgcaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 125264 0.67 0.776413
Target:  5'- cCGCCGCGaGACuugCCGcCUCCGUcgcGGUCg -3'
miRNA:   3'- -GCGGCGUcUUG---GGCaGAGGCAu--CCGG- -5'
24340 5' -58.6 NC_005264.1 + 58679 0.67 0.767332
Target:  5'- gCGCUGCAGGcgcACCCGgcCUCUaUGacGGCCg -3'
miRNA:   3'- -GCGGCGUCU---UGGGCa-GAGGcAU--CCGG- -5'
24340 5' -58.6 NC_005264.1 + 105244 0.67 0.767332
Target:  5'- gGCCGCGGAGCaaaCGUUuagagCCau-GGCCa -3'
miRNA:   3'- gCGGCGUCUUGg--GCAGa----GGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 102132 0.67 0.767332
Target:  5'- gGCCGCGGccaacAACCUGcugacCUCUGcggAGGCCu -3'
miRNA:   3'- gCGGCGUC-----UUGGGCa----GAGGCa--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 64077 0.68 0.758138
Target:  5'- aGCCGCAGcaGAgCCGcCUUCc-GGGCCa -3'
miRNA:   3'- gCGGCGUC--UUgGGCaGAGGcaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 7652 0.68 0.74884
Target:  5'- aCGCCGCcugccggcucggAGGGCUCGgcCUCCaUGGGCUc -3'
miRNA:   3'- -GCGGCG------------UCUUGGGCa-GAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 126679 0.68 0.74884
Target:  5'- aCGCCGCcugccggcucggAGGGCUCGgcCUCCaUGGGCUc -3'
miRNA:   3'- -GCGGCG------------UCUUGGGCa-GAGGcAUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.