miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24341 5' -57.6 NC_005264.1 + 79973 0.66 0.83637
Target:  5'- -cGGCCAgcaaacagagaccgaUGCCGGC-C-GCGCGGAa- -3'
miRNA:   3'- caUCGGU---------------ACGGCCGcGaCGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 126291 0.66 0.832203
Target:  5'- -cGGCCAUGCCgcuuucgGGCGCgcgGC-CGAu-- -3'
miRNA:   3'- caUCGGUACGG-------CCGCGa--CGcGCUuau -5'
24341 5' -57.6 NC_005264.1 + 122778 0.66 0.824587
Target:  5'- -gGGCCucuUGCCgccggGGCGCUGCGgGc--- -3'
miRNA:   3'- caUCGGu--ACGG-----CCGCGACGCgCuuau -5'
24341 5' -57.6 NC_005264.1 + 3752 0.66 0.824587
Target:  5'- -gGGCCucuUGCCgccggGGCGCUGCGgGc--- -3'
miRNA:   3'- caUCGGu--ACGG-----CCGCGACGCgCuuau -5'
24341 5' -57.6 NC_005264.1 + 56802 0.66 0.824587
Target:  5'- -aAGUUAUGCUuuguccuGCGCUGCGCGGc-- -3'
miRNA:   3'- caUCGGUACGGc------CGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 57492 0.66 0.824587
Target:  5'- -cGGCgAagaUGCUGGCGC-GCGCGGc-- -3'
miRNA:   3'- caUCGgU---ACGGCCGCGaCGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 36127 0.66 0.815958
Target:  5'- -cGGCCGacgauuucuuUGCCcacguaGCGCUGUGCGAGc- -3'
miRNA:   3'- caUCGGU----------ACGGc-----CGCGACGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 131720 0.66 0.815958
Target:  5'- -cGGCguUGCUGGCGCUcugGCGCu---- -3'
miRNA:   3'- caUCGguACGGCCGCGA---CGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 87153 0.66 0.815958
Target:  5'- --cGCCGaaagaCGGCGCUGCGCGc--- -3'
miRNA:   3'- cauCGGUacg--GCCGCGACGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 18098 0.67 0.789089
Target:  5'- --uGUUAUGCCGGCaGaugGCGCGAGa- -3'
miRNA:   3'- cauCGGUACGGCCG-Cga-CGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 68246 0.67 0.770448
Target:  5'- -aAGCCAUGCCcGCGCcGCggGCGGc-- -3'
miRNA:   3'- caUCGGUACGGcCGCGaCG--CGCUuau -5'
24341 5' -57.6 NC_005264.1 + 55144 0.67 0.770448
Target:  5'- cGUGcGCUGUGCUGGCGCaGCGUa---- -3'
miRNA:   3'- -CAU-CGGUACGGCCGCGaCGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 42251 0.67 0.766657
Target:  5'- cGUAGUCcgGCCGGgGCccgccuauugccgGCGCGGu-- -3'
miRNA:   3'- -CAUCGGuaCGGCCgCGa------------CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 161278 0.67 0.766657
Target:  5'- cGUAGUCcgGCCGGgGCccgccuauugccgGCGCGGu-- -3'
miRNA:   3'- -CAUCGGuaCGGCCgCGa------------CGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 114989 0.67 0.760935
Target:  5'- -aGGCgCGUGCCGGCGCU-UGCa---- -3'
miRNA:   3'- caUCG-GUACGGCCGCGAcGCGcuuau -5'
24341 5' -57.6 NC_005264.1 + 119167 0.67 0.760935
Target:  5'- -cGGCCGccuuaacGCCGGCGCgcaGCGCGc--- -3'
miRNA:   3'- caUCGGUa------CGGCCGCGa--CGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 120191 0.67 0.760935
Target:  5'- --cGCCAgucUGCCGGCGC-GCGauggGggUAc -3'
miRNA:   3'- cauCGGU---ACGGCCGCGaCGCg---CuuAU- -5'
24341 5' -57.6 NC_005264.1 + 140 0.67 0.760935
Target:  5'- -cGGCCGccuuaacGCCGGCGCgcaGCGCGc--- -3'
miRNA:   3'- caUCGGUa------CGGCCGCGa--CGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 1164 0.67 0.760935
Target:  5'- --cGCCAgucUGCCGGCGC-GCGauggGggUAc -3'
miRNA:   3'- cauCGGU---ACGGCCGCGaCGCg---CuuAU- -5'
24341 5' -57.6 NC_005264.1 + 58366 0.67 0.741574
Target:  5'- cUGGCgGgGCCGGCGCgauaUGCGcCGGAUu -3'
miRNA:   3'- cAUCGgUaCGGCCGCG----ACGC-GCUUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.