Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 154908 | 1.13 | 0.00097 |
Target: 5'- gGCCGUGGACGACGCGUGGACGCGCGCg -3' miRNA: 3'- -CGGCACCUGCUGCGCACCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 131590 | 0.85 | 0.08403 |
Target: 5'- cGCCuagguGUGGAgGgagcggcGCGCGUGGGCGCGCGCg -3' miRNA: 3'- -CGG-----CACCUgC-------UGCGCACCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 3606 | 0.82 | 0.11682 |
Target: 5'- gGCCGUGGugGACG-GUGGGCGCuGUGg -3' miRNA: 3'- -CGGCACCugCUGCgCACCUGCG-CGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 16562 | 0.77 | 0.263626 |
Target: 5'- cGCgGUGGGCGGCGcCG-GGGCGgCgGCGCa -3' miRNA: 3'- -CGgCACCUGCUGC-GCaCCUGC-G-CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 39504 | 0.76 | 0.287772 |
Target: 5'- cGCUGUGGugGACGCcagGGACGauaaggaCGUGCu -3' miRNA: 3'- -CGGCACCugCUGCGca-CCUGC-------GCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 158531 | 0.76 | 0.287772 |
Target: 5'- cGCUGUGGugGACGCcagGGACGauaaggaCGUGCu -3' miRNA: 3'- -CGGCACCugCUGCGca-CCUGC-------GCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 122638 | 0.75 | 0.328966 |
Target: 5'- cGCCGcGGGgGGcCGCGaGGGCGgGCGCg -3' miRNA: 3'- -CGGCaCCUgCU-GCGCaCCUGCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 3611 | 0.75 | 0.328966 |
Target: 5'- cGCCGcGGGgGGcCGCGaGGGCGgGCGCg -3' miRNA: 3'- -CGGCaCCUgCU-GCGCaCCUGCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 79399 | 0.74 | 0.358261 |
Target: 5'- cGCCGcGGGCGugGCGaGGcCGCG-GCg -3' miRNA: 3'- -CGGCaCCUGCugCGCaCCuGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 65734 | 0.73 | 0.40552 |
Target: 5'- uGCUG-GGACGAUGUGUGGucCGCcgucggccgGCGCa -3' miRNA: 3'- -CGGCaCCUGCUGCGCACCu-GCG---------CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 248 | 0.73 | 0.439126 |
Target: 5'- uUUGUGcGGCGGCGC-UGGACGCG-GCa -3' miRNA: 3'- cGGCAC-CUGCUGCGcACCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 154948 | 0.73 | 0.439126 |
Target: 5'- -gCGUGGGgGACGuCGU--ACGCGCGCa -3' miRNA: 3'- cgGCACCUgCUGC-GCAccUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 120788 | 0.73 | 0.430575 |
Target: 5'- cGCCGcGGGCaACGCGauUGGAuaggcCGCGUGCg -3' miRNA: 3'- -CGGCaCCUGcUGCGC--ACCU-----GCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 100346 | 0.73 | 0.422122 |
Target: 5'- uCUGaUGGACGcCGUagaGGACGCGCGCa -3' miRNA: 3'- cGGC-ACCUGCuGCGca-CCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 40248 | 0.73 | 0.439126 |
Target: 5'- uGUCGUGGACGugcgguaccccaACGCgGUGcGGCGCuGCGUg -3' miRNA: 3'- -CGGCACCUGC------------UGCG-CAC-CUGCG-CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 8296 | 0.73 | 0.447774 |
Target: 5'- cCCGUGGGCGACGgG-GGcaccuGCGC-CGCg -3' miRNA: 3'- cGGCACCUGCUGCgCaCC-----UGCGcGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 127323 | 0.73 | 0.447774 |
Target: 5'- cCCGUGGGCGACGgG-GGcaccuGCGC-CGCg -3' miRNA: 3'- cGGCACCUGCUGCgCaCC-----UGCGcGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 140552 | 0.72 | 0.501523 |
Target: 5'- gGCUG-GGAUGGCagaaGGGCGCGCGCg -3' miRNA: 3'- -CGGCaCCUGCUGcgcaCCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 42518 | 0.72 | 0.500603 |
Target: 5'- aCUGUGGccugaugUGugGCGUGGGCGCagcuuccGCGCg -3' miRNA: 3'- cGGCACCu------GCugCGCACCUGCG-------CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 158474 | 0.71 | 0.510761 |
Target: 5'- uGCCG-GGGCGGuggaaagcaUGC-UGcGACGCGCGCu -3' miRNA: 3'- -CGGCaCCUGCU---------GCGcAC-CUGCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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