miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24344 5' -54.7 NC_005264.1 + 152727 1.12 0.003211
Target:  5'- gGGAGUUGCCUCCACGUCACGGACACGg -3'
miRNA:   3'- -CCUCAACGGAGGUGCAGUGCCUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 107756 0.81 0.294362
Target:  5'- cGAGUUGCCUCCGCGUCAauGGCcuCGu -3'
miRNA:   3'- cCUCAACGGAGGUGCAGUgcCUGu-GC- -5'
24344 5' -54.7 NC_005264.1 + 98540 0.71 0.758773
Target:  5'- -----gGCCUCUGCGgaggCAUGGACGCGa -3'
miRNA:   3'- ccucaaCGGAGGUGCa---GUGCCUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 48884 0.69 0.854224
Target:  5'- ----gUGCCUUCACGUCcgagaaGCGGcACGCGg -3'
miRNA:   3'- ccucaACGGAGGUGCAG------UGCC-UGUGC- -5'
24344 5' -54.7 NC_005264.1 + 3168 0.69 0.854224
Target:  5'- cGGcGac-CCUCCGCGUCGCGacGGCGCGg -3'
miRNA:   3'- -CCuCaacGGAGGUGCAGUGC--CUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 122195 0.69 0.854224
Target:  5'- cGGcGac-CCUCCGCGUCGCGacGGCGCGg -3'
miRNA:   3'- -CCuCaacGGAGGUGCAGUGC--CUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 5026 0.69 0.861107
Target:  5'- aGAGgagGCCacgagguUCCGCGUCGUGGGCGCc -3'
miRNA:   3'- cCUCaa-CGG-------AGGUGCAGUGCCUGUGc -5'
24344 5' -54.7 NC_005264.1 + 150898 0.69 0.861861
Target:  5'- uGGAGUcgcuUGCCUCCAUcuaCcCGGACAUa -3'
miRNA:   3'- -CCUCA----ACGGAGGUGca-GuGCCUGUGc -5'
24344 5' -54.7 NC_005264.1 + 7746 0.69 0.869296
Target:  5'- cGGAaacggGCuCUCCGCGUCGgcaguCGGGCACu -3'
miRNA:   3'- -CCUcaa--CG-GAGGUGCAGU-----GCCUGUGc -5'
24344 5' -54.7 NC_005264.1 + 84239 0.69 0.869296
Target:  5'- cGAGcUUGCCUaCCGCGU---GGACACGc -3'
miRNA:   3'- cCUC-AACGGA-GGUGCAgugCCUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 126772 0.69 0.869296
Target:  5'- cGGAaacggGCuCUCCGCGUCGgcaguCGGGCACu -3'
miRNA:   3'- -CCUcaa--CG-GAGGUGCAGU-----GCCUGUGc -5'
24344 5' -54.7 NC_005264.1 + 63031 0.69 0.869296
Target:  5'- cGGGGggGaaauaCUCUACGcCAgGGGCGCGu -3'
miRNA:   3'- -CCUCaaCg----GAGGUGCaGUgCCUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 117693 0.69 0.883533
Target:  5'- ----cUGCCUCCGCGUCGUGG-CGCc -3'
miRNA:   3'- ccucaACGGAGGUGCAGUGCCuGUGc -5'
24344 5' -54.7 NC_005264.1 + 114156 0.68 0.890325
Target:  5'- -cAGUUGaCCUCCACGUUgGCGGAgGuCGa -3'
miRNA:   3'- ccUCAAC-GGAGGUGCAG-UGCCUgU-GC- -5'
24344 5' -54.7 NC_005264.1 + 4079 0.68 0.903238
Target:  5'- gGGGcuGUUGCaCgggCgGCGUCGCGG-CACGa -3'
miRNA:   3'- -CCU--CAACG-Ga--GgUGCAGUGCCuGUGC- -5'
24344 5' -54.7 NC_005264.1 + 123106 0.68 0.903238
Target:  5'- gGGGcuGUUGCaCgggCgGCGUCGCGG-CACGa -3'
miRNA:   3'- -CCU--CAACG-Ga--GgUGCAGUGCCuGUGC- -5'
24344 5' -54.7 NC_005264.1 + 29290 0.68 0.917522
Target:  5'- cGGGcgcgUGCCUCgACGUuuucuuugcgccaugCAUGGACACa -3'
miRNA:   3'- cCUCa---ACGGAGgUGCA---------------GUGCCUGUGc -5'
24344 5' -54.7 NC_005264.1 + 75605 0.68 0.920884
Target:  5'- -uAGUcgGCCUCCAUGccuuUCACGuACACGg -3'
miRNA:   3'- ccUCAa-CGGAGGUGC----AGUGCcUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 127834 0.67 0.925768
Target:  5'- --cGUUGCCUCCGCGgcggCcgGCGGucuagaacccggcGCGCGa -3'
miRNA:   3'- ccuCAACGGAGGUGCa---G--UGCC-------------UGUGC- -5'
24344 5' -54.7 NC_005264.1 + 95323 0.67 0.926299
Target:  5'- uGGAGaUUGCCgccgccgggcgCCGCGaaACGGACuCGg -3'
miRNA:   3'- -CCUC-AACGGa----------GGUGCagUGCCUGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.