Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24348 | 3' | -56.5 | NC_005264.1 | + | 158090 | 0.69 | 0.74417 |
Target: 5'- cGCGcGGCGGUCCacccccGGACGcCG-GCUCg -3' miRNA: 3'- aUGC-CCGUUAGGa-----CCUGCuGCuCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 157361 | 0.7 | 0.664141 |
Target: 5'- gGCGGGCccuggccguGAUgCUGGGCGGCgGGGCg- -3' miRNA: 3'- aUGCCCG---------UUAgGACCUGCUG-CUCGag -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 151886 | 0.69 | 0.757662 |
Target: 5'- cGCGGGCAucagCUguauguggcggaggGGACGGCG-GCUCc -3' miRNA: 3'- aUGCCCGUua--GGa-------------CCUGCUGCuCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 148674 | 0.68 | 0.782122 |
Target: 5'- -cCGaGGCGAgaaauagCCUGGuuGGCGAGCUg -3' miRNA: 3'- auGC-CCGUUa------GGACCugCUGCUCGAg -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 145936 | 0.66 | 0.901095 |
Target: 5'- cGCGGGCAugggCCUcaccGACGACG-GCg- -3' miRNA: 3'- aUGCCCGUua--GGAc---CUGCUGCuCGag -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 145662 | 1.07 | 0.003149 |
Target: 5'- gUACGGGCAAUCCUGGACGACGAGCUCu -3' miRNA: 3'- -AUGCCCGUUAGGACCUGCUGCUCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 132270 | 0.67 | 0.850231 |
Target: 5'- aGCaGGUggUCCUcuaccgacucggaGGACGACGAggGUUCg -3' miRNA: 3'- aUGcCCGuuAGGA-------------CCUGCUGCU--CGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 128887 | 0.69 | 0.714642 |
Target: 5'- uUGCGGcaccGCucGUCCUcgacGACGGCGGGCUCa -3' miRNA: 3'- -AUGCC----CGu-UAGGAc---CUGCUGCUCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 128774 | 0.73 | 0.522362 |
Target: 5'- cUGCGGGCuuccuucuucucGGUUCUGGuuugugGCGACGAGUUCc -3' miRNA: 3'- -AUGCCCG------------UUAGGACC------UGCUGCUCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 127809 | 0.69 | 0.724568 |
Target: 5'- gGCGGGCGucggCCaGGACGGCcAGCg- -3' miRNA: 3'- aUGCCCGUua--GGaCCUGCUGcUCGag -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 124728 | 0.69 | 0.753828 |
Target: 5'- cGCGGGCAAcgCCUGG-CGGCGGa--- -3' miRNA: 3'- aUGCCCGUUa-GGACCuGCUGCUcgag -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 123479 | 0.75 | 0.405654 |
Target: 5'- gUACGGGCAugcgguggccgcgcgGUUgCUGGGCGAUGuGCUCg -3' miRNA: 3'- -AUGCCCGU---------------UAG-GACCUGCUGCuCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 122357 | 0.67 | 0.851021 |
Target: 5'- gACGGGCAAUaCUGGccuUGGCGAgggucuuucGCUCc -3' miRNA: 3'- aUGCCCGUUAgGACCu--GCUGCU---------CGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 120642 | 0.66 | 0.887893 |
Target: 5'- aUACGGGacg-CC-GGugGGCGcGGCUCc -3' miRNA: 3'- -AUGCCCguuaGGaCCugCUGC-UCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 119117 | 0.66 | 0.880951 |
Target: 5'- gGCGGGCucugCUgggGGAgGGCGAGgaCg -3' miRNA: 3'- aUGCCCGuua-GGa--CCUgCUGCUCgaG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 108977 | 0.66 | 0.901095 |
Target: 5'- cACGGGguAcgacgcgucucUCCuagccuUGaACGACGAGCUCa -3' miRNA: 3'- aUGCCCguU-----------AGG------ACcUGCUGCUCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 100535 | 0.71 | 0.633459 |
Target: 5'- gGCGGGUcuAGUCC-GGACGAC--GCUCg -3' miRNA: 3'- aUGCCCG--UUAGGaCCUGCUGcuCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 100201 | 0.68 | 0.800326 |
Target: 5'- cGCGuGCugcgCUUGGACGGCGGGCg- -3' miRNA: 3'- aUGCcCGuua-GGACCUGCUGCUCGag -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 89547 | 0.66 | 0.866408 |
Target: 5'- cGCGGGCAG---UGucCGGCGAGCUUu -3' miRNA: 3'- aUGCCCGUUaggACcuGCUGCUCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 85449 | 0.66 | 0.873788 |
Target: 5'- aUGCGGGCcGgcccuggaacUCCUuacGGGCGACGcGCUa -3' miRNA: 3'- -AUGCCCGuU----------AGGA---CCUGCUGCuCGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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