miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 5' -61.4 NC_005264.1 + 42194 0.71 0.401441
Target:  5'- uUGgAGCCGCGCCCaC-CGGCGucCCGUAu -3'
miRNA:   3'- gACaUCGGCGCGGG-GaGCUGC--GGCAU- -5'
24348 5' -61.4 NC_005264.1 + 121017 0.68 0.555042
Target:  5'- ---gAGCCGCGCUCC-CGGCGauguaCGUGg -3'
miRNA:   3'- gacaUCGGCGCGGGGaGCUGCg----GCAU- -5'
24348 5' -61.4 NC_005264.1 + 107676 0.67 0.633447
Target:  5'- ---cAGCCGCGCCCa--GAgGCCGc- -3'
miRNA:   3'- gacaUCGGCGCGGGgagCUgCGGCau -5'
24348 5' -61.4 NC_005264.1 + 128447 0.7 0.470638
Target:  5'- cCUGagcucgAGCCGCGCCCgUCuuuGGCGUCGg- -3'
miRNA:   3'- -GACa-----UCGGCGCGGGgAG---CUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 140069 0.74 0.259278
Target:  5'- gUGUcGCCGCGCCCCUCauugccCGCCGc- -3'
miRNA:   3'- gACAuCGGCGCGGGGAGcu----GCGGCau -5'
24348 5' -61.4 NC_005264.1 + 2757 0.7 0.42664
Target:  5'- ----cGgCGCGUCCCcCGGCGCCGUAc -3'
miRNA:   3'- gacauCgGCGCGGGGaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 85072 0.67 0.642328
Target:  5'- uCUGcGGCCGCGUCgucagauUCggauaCGGCGCCGUAg -3'
miRNA:   3'- -GACaUCGGCGCGG-------GGa----GCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 15144 0.67 0.643314
Target:  5'- uCUGUcugcaccGCCGCGUCUCUgGACGaCCGa- -3'
miRNA:   3'- -GACAu------CGGCGCGGGGAgCUGC-GGCau -5'
24348 5' -61.4 NC_005264.1 + 135382 0.67 0.62358
Target:  5'- aUGUccuuuGCUGCGCCgCUCGGCGCa--- -3'
miRNA:   3'- gACAu----CGGCGCGGgGAGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 33277 0.68 0.545402
Target:  5'- -----uCCGCGCCCCUgagggCGGCGCCGc- -3'
miRNA:   3'- gacaucGGCGCGGGGA-----GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 121407 0.7 0.435246
Target:  5'- -aGUGGCCGuCGCCCgCaggagccCGGCGCCGg- -3'
miRNA:   3'- gaCAUCGGC-GCGGG-Ga------GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 19743 0.66 0.672836
Target:  5'- -gGUucGCCGUGCCCCcagcaUCG-CGCCGc- -3'
miRNA:   3'- gaCAu-CGGCGCGGGG-----AGCuGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 52940 0.68 0.574465
Target:  5'- --aUGGCCGCGCCCg-CGGCGCa--- -3'
miRNA:   3'- gacAUCGGCGCGGGgaGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 159967 0.68 0.574465
Target:  5'- ----cGCCGCGCCCCggUCGAUcgcaGCCGc- -3'
miRNA:   3'- gacauCGGCGCGGGG--AGCUG----CGGCau -5'
24348 5' -61.4 NC_005264.1 + 41027 0.68 0.574465
Target:  5'- gCUGU-GCCuuccacGUGCCCCUCcuaacguauugGGCGCCGUc -3'
miRNA:   3'- -GACAuCGG------CGCGGGGAG-----------CUGCGGCAu -5'
24348 5' -61.4 NC_005264.1 + 133608 0.67 0.62358
Target:  5'- ----cGCUGUGCUCCUCGACcGCUGg- -3'
miRNA:   3'- gacauCGGCGCGGGGAGCUG-CGGCau -5'
24348 5' -61.4 NC_005264.1 + 68315 0.67 0.62358
Target:  5'- -cGgcGCCGCuGCCCUcccaCGugGCCGa- -3'
miRNA:   3'- gaCauCGGCG-CGGGGa---GCugCGGCau -5'
24348 5' -61.4 NC_005264.1 + 156365 0.67 0.62358
Target:  5'- --aUGGCCGCGCaCCC-CGAcguuCGCCGc- -3'
miRNA:   3'- gacAUCGGCGCG-GGGaGCU----GCGGCau -5'
24348 5' -61.4 NC_005264.1 + 85412 0.67 0.633447
Target:  5'- -aGUGGUCGCGaaccaCCCUC-ACGUCGUc -3'
miRNA:   3'- gaCAUCGGCGCg----GGGAGcUGCGGCAu -5'
24348 5' -61.4 NC_005264.1 + 92649 0.67 0.633447
Target:  5'- ----uGCCGCGUggCCCUCG-CGCCGc- -3'
miRNA:   3'- gacauCGGCGCG--GGGAGCuGCGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.