miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 5' -61.4 NC_005264.1 + 54329 0.66 0.702079
Target:  5'- -gGUGGUgGCGCa---CGACGCCGUAc -3'
miRNA:   3'- gaCAUCGgCGCGgggaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 37166 0.68 0.584237
Target:  5'- uCUGccggAGCUuccggacauGUGCCCCcgCGugGCCGUGg -3'
miRNA:   3'- -GACa---UCGG---------CGCGGGGa-GCugCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 121017 0.68 0.555042
Target:  5'- ---gAGCCGCGCUCC-CGGCGauguaCGUGg -3'
miRNA:   3'- gacaUCGGCGCGGGGaGCUGCg----GCAU- -5'
24348 5' -61.4 NC_005264.1 + 145698 0.96 0.008662
Target:  5'- cCUGUAGCCGC-CCCCUCGACGCCGUAc -3'
miRNA:   3'- -GACAUCGGCGcGGGGAGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 45406 0.66 0.682625
Target:  5'- aUGgagGGCgGCGCCCUgCG-CGCCGc- -3'
miRNA:   3'- gACa--UCGgCGCGGGGaGCuGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 3428 0.66 0.672836
Target:  5'- -cGUagGGCCGCGCCCgcgcugCUCGcaaaGCGCCa-- -3'
miRNA:   3'- gaCA--UCGGCGCGGG------GAGC----UGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 58910 0.66 0.653173
Target:  5'- -cGgauGCCGC-CUCCUCGAUGgCGUAg -3'
miRNA:   3'- gaCau-CGGCGcGGGGAGCUGCgGCAU- -5'
24348 5' -61.4 NC_005264.1 + 15144 0.67 0.643314
Target:  5'- uCUGUcugcaccGCCGCGUCUCUgGACGaCCGa- -3'
miRNA:   3'- -GACAu------CGGCGCGGGGAgCUGC-GGCau -5'
24348 5' -61.4 NC_005264.1 + 143995 0.67 0.633447
Target:  5'- -gGU-GCCGC-CCCCUCGAUGCa--- -3'
miRNA:   3'- gaCAuCGGCGcGGGGAGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 151844 0.68 0.584237
Target:  5'- aCUGgGGCCGcCGCUCCggCGGCGacaCGUGg -3'
miRNA:   3'- -GACaUCGGC-GCGGGGa-GCUGCg--GCAU- -5'
24348 5' -61.4 NC_005264.1 + 37338 0.67 0.62358
Target:  5'- --aUGGCCGCGCaCCC-CGAcguuCGCCGc- -3'
miRNA:   3'- gacAUCGGCGCG-GGGaGCU----GCGGCau -5'
24348 5' -61.4 NC_005264.1 + 107676 0.67 0.633447
Target:  5'- ---cAGCCGCGCCCa--GAgGCCGc- -3'
miRNA:   3'- gacaUCGGCGCGGGgagCUgCGGCau -5'
24348 5' -61.4 NC_005264.1 + 98428 0.66 0.692375
Target:  5'- ----cGCCGUGCCCg-CGGCGUCGg- -3'
miRNA:   3'- gacauCGGCGCGGGgaGCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 140848 0.67 0.613718
Target:  5'- ----cGCCGCGCCUUUCGcuuGCGCCa-- -3'
miRNA:   3'- gacauCGGCGCGGGGAGC---UGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 69572 0.66 0.692375
Target:  5'- aCUGaAGCCGgGgCCCU-GGCGCCa-- -3'
miRNA:   3'- -GACaUCGGCgCgGGGAgCUGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 85072 0.67 0.642328
Target:  5'- uCUGcGGCCGCGUCgucagauUCggauaCGGCGCCGUAg -3'
miRNA:   3'- -GACaUCGGCGCGG-------GGa----GCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 100151 0.67 0.59404
Target:  5'- -gGUAGCaCGCGUUCUUCGcgcugACGCCGa- -3'
miRNA:   3'- gaCAUCG-GCGCGGGGAGC-----UGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 40940 0.68 0.574465
Target:  5'- ----cGCCGCGCCCCggUCGAUcgcaGCCGc- -3'
miRNA:   3'- gacauCGGCGCGGGG--AGCUG----CGGCau -5'
24348 5' -61.4 NC_005264.1 + 104942 0.66 0.682625
Target:  5'- ---cAGCCGUGCCaagcgccgagCCUCGugGCCc-- -3'
miRNA:   3'- gacaUCGGCGCGG----------GGAGCugCGGcau -5'
24348 5' -61.4 NC_005264.1 + 108228 0.66 0.663016
Target:  5'- -cGUGGCCGaUGUCCCgcaCG-CGCCGa- -3'
miRNA:   3'- gaCAUCGGC-GCGGGGa--GCuGCGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.