Results 41 - 60 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 27871 | 0.68 | 0.42094 |
Target: 5'- uGCGCCGCCGCCuuuUUGUCGUGu--- -3' miRNA: 3'- gCGCGGCGGCGGuc-GACGGCGCcuuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 28045 | 0.68 | 0.437755 |
Target: 5'- gCGCGCgCGaCGCCGGgUaaaaGCgCGCGGAAGc -3' miRNA: 3'- -GCGCG-GCgGCGGUCgA----CG-GCGCCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 29460 | 0.66 | 0.527059 |
Target: 5'- uGCGCCGCCGCgAuGaCUcucGCCGagucgucgaGGAGGg -3' miRNA: 3'- gCGCGGCGGCGgU-C-GA---CGGCg--------CCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 30375 | 0.71 | 0.276092 |
Target: 5'- gGCGCCGCCGCgucgcgucuCGGCgGCgGCGGu-- -3' miRNA: 3'- gCGCGGCGGCG---------GUCGaCGgCGCCuuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 30409 | 0.77 | 0.112266 |
Target: 5'- gCGCGCCGgUGCggagAGCUGCgGCGGAGGa -3' miRNA: 3'- -GCGCGGCgGCGg---UCGACGgCGCCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 30843 | 0.68 | 0.437755 |
Target: 5'- uCGCGUCGUCGUCGGCggcggcgcGCCGCccGGuAGg -3' miRNA: 3'- -GCGCGGCGGCGGUCGa-------CGGCG--CCuUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 31033 | 0.66 | 0.554274 |
Target: 5'- gGUGCCGCCuaGCggucgugCGGCUGCguUGCGGAc- -3' miRNA: 3'- gCGCGGCGG--CG-------GUCGACG--GCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 31120 | 0.66 | 0.564708 |
Target: 5'- aGCGCCacgagCGCCAGCaacGCCGCGcAGGc -3' miRNA: 3'- gCGCGGcg---GCGGUCGa--CGGCGCcUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 31173 | 0.66 | 0.536391 |
Target: 5'- aCGUGCCGCCaaCGGUcugGCgGCGGGc- -3' miRNA: 3'- -GCGCGGCGGcgGUCGa--CGgCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 31248 | 0.7 | 0.353305 |
Target: 5'- gCGCGCCGCuCccuccacaccuaggcGCCAGgUGCCGCGcacaugcaGAAGc -3' miRNA: 3'- -GCGCGGCG-G---------------CGGUCgACGGCGC--------CUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 32020 | 0.66 | 0.55522 |
Target: 5'- uGCGgaaCCGCCuCgGGCUGCCcCGGAGu -3' miRNA: 3'- gCGC---GGCGGcGgUCGACGGcGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 33849 | 0.71 | 0.270003 |
Target: 5'- gCGCGCCGCgGCagAGCUGaagaaCGUGGAGc -3' miRNA: 3'- -GCGCGGCGgCGg-UCGACg----GCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 33901 | 0.7 | 0.327366 |
Target: 5'- aGCGCgagauagCGCCGCCuuuCUGCCGCcaggcugGGAAGg -3' miRNA: 3'- gCGCG-------GCGGCGGuc-GACGGCG-------CCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 34169 | 0.67 | 0.508584 |
Target: 5'- cCGCGCCcugcagucacaGCUGCuggaCAGCaGCCGCGGcauGGa -3' miRNA: 3'- -GCGCGG-----------CGGCG----GUCGaCGGCGCCu--UC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 34262 | 0.69 | 0.379886 |
Target: 5'- gCGCGCgGuaauCCGCguGCUgcgcuccGCCGCGGAAa -3' miRNA: 3'- -GCGCGgC----GGCGguCGA-------CGGCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 34752 | 0.71 | 0.28229 |
Target: 5'- gCGCGCCgGUCGCC-GCUGUCGCuacacGAAGa -3' miRNA: 3'- -GCGCGG-CGGCGGuCGACGGCGc----CUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 34989 | 0.86 | 0.028419 |
Target: 5'- gCGCGCCGgguucuagaCCGCCGGCcGCCGCGGAGGc -3' miRNA: 3'- -GCGCGGC---------GGCGGUCGaCGGCGCCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 36073 | 0.66 | 0.536391 |
Target: 5'- aCGUGCUGCCGUC-GCUGUcccucucuucggCGCGGcuGg -3' miRNA: 3'- -GCGCGGCGGCGGuCGACG------------GCGCCuuC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 36306 | 0.69 | 0.396464 |
Target: 5'- gGaCGUCGUCGCUAucGCUGCCGUaGAGGa -3' miRNA: 3'- gC-GCGGCGGCGGU--CGACGGCGcCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 36766 | 0.7 | 0.343047 |
Target: 5'- gGCGCCGUCGCCGcUUGCgCGCaGAAu -3' miRNA: 3'- gCGCGGCGGCGGUcGACG-GCGcCUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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