miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 137972 0.73 0.199958
Target:  5'- uCGUGCCGCC-CCGGCUccgguaagacuucGCCguGCGGAAGc -3'
miRNA:   3'- -GCGCGGCGGcGGUCGA-------------CGG--CGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 136463 0.74 0.17811
Target:  5'- cCGCGCucagagacggCGCCGCgCAGcCUGCCGCGGc-- -3'
miRNA:   3'- -GCGCG----------GCGGCG-GUC-GACGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 136360 0.68 0.429299
Target:  5'- gGCGCugggCGCUGCCGGCgcgaauagcGCUGUGGAGc -3'
miRNA:   3'- gCGCG----GCGGCGGUCGa--------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 136193 0.67 0.481404
Target:  5'- aGCGCgG-CGCCGGC-GCCGCGcuAAGg -3'
miRNA:   3'- gCGCGgCgGCGGUCGaCGGCGCc-UUC- -5'
24349 3' -64.4 NC_005264.1 + 135673 0.66 0.517789
Target:  5'- uGCGCCGCCGUgaagaCGGCcUGCa-CGGAc- -3'
miRNA:   3'- gCGCGGCGGCG-----GUCG-ACGgcGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 133232 0.66 0.55522
Target:  5'- uGCGCCGCCGCgCuacGCUucgaucuggaGCCGCaGGc- -3'
miRNA:   3'- gCGCGGCGGCG-Gu--CGA----------CGGCGcCUuc -5'
24349 3' -64.4 NC_005264.1 + 132604 0.7 0.308184
Target:  5'- gGCaCCGCUuuGCCGcGCUgGCCGCGGAAa -3'
miRNA:   3'- gCGcGGCGG--CGGU-CGA-CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 132452 0.68 0.429299
Target:  5'- gCGCGaCCGCCGCCGccgagacgcgacGCgGCgGCGccGAAGg -3'
miRNA:   3'- -GCGC-GGCGGCGGU------------CGaCGgCGC--CUUC- -5'
24349 3' -64.4 NC_005264.1 + 132232 0.68 0.436905
Target:  5'- cCGuCGCCGCCGCCgucgccgGGCUGCUucuccCGaGAAGc -3'
miRNA:   3'- -GC-GCGGCGGCGG-------UCGACGGc----GC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 131996 0.72 0.228797
Target:  5'- gCGCGCCGCCGCCGacgacgacGCgaGCCcguucgagcacgagGCGGAAa -3'
miRNA:   3'- -GCGCGGCGGCGGU--------CGa-CGG--------------CGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 130887 0.66 0.55901
Target:  5'- cCGuCGCCGCCacucgcgagcucagaGCCgAGCcgcgaggGCCGUGGGAa -3'
miRNA:   3'- -GC-GCGGCGG---------------CGG-UCGa------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 129899 0.66 0.564708
Target:  5'- -aUGCUGCUGCgAGggGCCGUGGGGa -3'
miRNA:   3'- gcGCGGCGGCGgUCgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 129565 0.67 0.481404
Target:  5'- gGCGCCGCCcUCAGg-GgCGCGGAu- -3'
miRNA:   3'- gCGCGGCGGcGGUCgaCgGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 126077 0.67 0.481404
Target:  5'- gCGCGCaagcggcgacggCGCCgGCCGGCgccgucgcGCUGCGGGGa -3'
miRNA:   3'- -GCGCG------------GCGG-CGGUCGa-------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 126029 0.67 0.508584
Target:  5'- cCGCGCC-UCGCCuGC-GCCGCaGAGa -3'
miRNA:   3'- -GCGCGGcGGCGGuCGaCGGCGcCUUc -5'
24349 3' -64.4 NC_005264.1 + 125258 0.67 0.508584
Target:  5'- cCGCgGCCGCCGCgAGacuUGCCGCc---- -3'
miRNA:   3'- -GCG-CGGCGGCGgUCg--ACGGCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 124855 0.66 0.527059
Target:  5'- gGCgGUgGCCGCCAcucGCcugGCCGCGGu-- -3'
miRNA:   3'- gCG-CGgCGGCGGU---CGa--CGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 124563 0.67 0.484988
Target:  5'- aCGuCGCCGCCGuCCGGgaCUGacgucaccgacagcaCCGCGGAc- -3'
miRNA:   3'- -GC-GCGGCGGC-GGUC--GAC---------------GGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 124463 0.67 0.490388
Target:  5'- gGCGUCGCCGCU--CUcGCCGgaGGAGGu -3'
miRNA:   3'- gCGCGGCGGCGGucGA-CGGCg-CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 123753 0.66 0.517789
Target:  5'- aGaCGCCGCUGCCcGCcgaGCCGgcgucCGGggGu -3'
miRNA:   3'- gC-GCGGCGGCGGuCGa--CGGC-----GCCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.