miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 64515 0.72 0.241174
Target:  5'- cCGCGCUGUucUGUCcGCgccGCCGCGGAGGg -3'
miRNA:   3'- -GCGCGGCG--GCGGuCGa--CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 148497 0.73 0.200427
Target:  5'- aCGCGCUgGUCGCguuggCGGCgagcGCCGCGGAAGa -3'
miRNA:   3'- -GCGCGG-CGGCG-----GUCGa---CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 121880 0.73 0.200427
Target:  5'- uCGCGCCGUCGCCcGCUGCgGCu---- -3'
miRNA:   3'- -GCGCGGCGGCGGuCGACGgCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 26498 0.73 0.210016
Target:  5'- uGCGgCGCCGaaCCAGCUucuacGCCGCGGcGGg -3'
miRNA:   3'- gCGCgGCGGC--GGUCGA-----CGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 70668 0.73 0.224619
Target:  5'- cCGCGgCGCCGCCGGCaGgcaauuuuuacgcCCGCGGgcGa -3'
miRNA:   3'- -GCGCgGCGGCGGUCGaC-------------GGCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 58309 0.73 0.225138
Target:  5'- gCGCGCU-UCGCCGGCUGCC-CGcGAAGg -3'
miRNA:   3'- -GCGCGGcGGCGGUCGACGGcGC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 131996 0.72 0.228797
Target:  5'- gCGCGCCGCCGCCGacgacgacGCgaGCCcguucgagcacgagGCGGAAa -3'
miRNA:   3'- -GCGCGGCGGCGGU--------CGa-CGG--------------CGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 22068 0.72 0.23038
Target:  5'- aGCGCCGCCGCCGGaaggcgguucUUGCaacaauauUGCGGAAc -3'
miRNA:   3'- gCGCGGCGGCGGUC----------GACG--------GCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 55905 0.72 0.241174
Target:  5'- uGCgGCCGCCG-CAGCUGUCGaGGAAa -3'
miRNA:   3'- gCG-CGGCGGCgGUCGACGGCgCCUUc -5'
24349 3' -64.4 NC_005264.1 + 49587 0.73 0.200427
Target:  5'- gGCGCaCGCCGCCGGCgaccagGaCGaCGGggGg -3'
miRNA:   3'- gCGCG-GCGGCGGUCGa-----CgGC-GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 72021 0.74 0.186319
Target:  5'- uGCGCgGCCGCCAcacgcgagacguGCUGaccuccaUCGCGGAAGa -3'
miRNA:   3'- gCGCGgCGGCGGU------------CGAC-------GGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 66609 0.74 0.18239
Target:  5'- uGCGCCGCguUGCCGGCgccGUCGCGGcccGAGg -3'
miRNA:   3'- gCGCGGCG--GCGGUCGa--CGGCGCC---UUC- -5'
24349 3' -64.4 NC_005264.1 + 25556 0.81 0.059886
Target:  5'- cCGCGUCGCCGCCAaC-GCCGCGGAAu -3'
miRNA:   3'- -GCGCGGCGGCGGUcGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 20350 0.78 0.101659
Target:  5'- aCGCGCCG-UGCCAGC-GUCGUGGGAGa -3'
miRNA:   3'- -GCGCGGCgGCGGUCGaCGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 149436 0.77 0.112266
Target:  5'- gCGCGCCGgUGCggagAGCUGCgGCGGAGGa -3'
miRNA:   3'- -GCGCGGCgGCGg---UCGACGgCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 97441 0.77 0.11708
Target:  5'- gGCGCCGCCGCggaucugauagacgUAGC-GCCGCuGGAAGa -3'
miRNA:   3'- gCGCGGCGGCG--------------GUCGaCGGCG-CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 162694 0.77 0.117949
Target:  5'- gCGCGCUGCgCGCCGGCguuaaggcgGCCGCcgGGGAGc -3'
miRNA:   3'- -GCGCGGCG-GCGGUCGa--------CGGCG--CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 158234 0.76 0.13335
Target:  5'- aCGCGCCuacGCCGCCGcggcGCUGgCGgGGAGGg -3'
miRNA:   3'- -GCGCGG---CGGCGGU----CGACgGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 156388 0.76 0.143459
Target:  5'- cCGCGCCGCCgaggaguucuccGCCAGCgacgccGCCGCGaGAGu -3'
miRNA:   3'- -GCGCGGCGG------------CGGUCGa-----CGGCGC-CUUc -5'
24349 3' -64.4 NC_005264.1 + 136463 0.74 0.17811
Target:  5'- cCGCGCucagagacggCGCCGCgCAGcCUGCCGCGGc-- -3'
miRNA:   3'- -GCGCG----------GCGGCG-GUC-GACGGCGCCuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.