miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 83685 0.67 0.930367
Target:  5'- --aGUCUACcGCGaaaagaaccagaaccACGGAGAAGgGGCa -3'
miRNA:   3'- cugCAGGUGcCGU---------------UGCCUCUUCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 27823 0.66 0.933427
Target:  5'- -cUGUCUGC--CGACGGAGggGCAGa -3'
miRNA:   3'- cuGCAGGUGccGUUGCCUCuuCGUCg -5'
24349 5' -54.9 NC_005264.1 + 96888 0.66 0.938336
Target:  5'- aGAUGg-CAUGGCGGCGcgcGAGGGcGCGGCa -3'
miRNA:   3'- -CUGCagGUGCCGUUGC---CUCUU-CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 79410 0.66 0.951231
Target:  5'- uGGCGaggCCGCGGCGgaacccagcguggGCGGugcggggucuccGGggGCAGa -3'
miRNA:   3'- -CUGCa--GGUGCCGU-------------UGCC------------UCuuCGUCg -5'
24349 5' -54.9 NC_005264.1 + 16477 0.67 0.905289
Target:  5'- cGACGcagCCGCGGUggccuGCGGGgucGAGGCAcGCc -3'
miRNA:   3'- -CUGCa--GGUGCCGu----UGCCU---CUUCGU-CG- -5'
24349 5' -54.9 NC_005264.1 + 45518 0.67 0.921227
Target:  5'- gGACGacCCGCGcacgcuucucagucGCAcGCGGAGA-GCGGCa -3'
miRNA:   3'- -CUGCa-GGUGC--------------CGU-UGCCUCUuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 116981 0.66 0.933427
Target:  5'- aGACuaCUAUGGCGGCGGAGugucguuGguGCa -3'
miRNA:   3'- -CUGcaGGUGCCGUUGCCUCuu-----CguCG- -5'
24349 5' -54.9 NC_005264.1 + 126248 0.66 0.951231
Target:  5'- aGGCGuaucuuuauaccaUCCugGGCGuguUGGuccgcGGAGGCGGCc -3'
miRNA:   3'- -CUGC-------------AGGugCCGUu--GCC-----UCUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 81888 0.67 0.92289
Target:  5'- uGGCGcCUugGCGGCGAUGGGcGGGCgAGCc -3'
miRNA:   3'- -CUGCaGG--UGCCGUUGCCUcUUCG-UCG- -5'
24349 5' -54.9 NC_005264.1 + 3681 0.66 0.951641
Target:  5'- -cCGUCUcgGCGGCGAgacgaGGAGGA-CGGCg -3'
miRNA:   3'- cuGCAGG--UGCCGUUg----CCUCUUcGUCG- -5'
24349 5' -54.9 NC_005264.1 + 83119 0.66 0.933427
Target:  5'- cGACGggcgCCAaGGCcGCGGAGgcGCGucuGCc -3'
miRNA:   3'- -CUGCa---GGUgCCGuUGCCUCuuCGU---CG- -5'
24349 5' -54.9 NC_005264.1 + 102235 0.67 0.928279
Target:  5'- -cCGgcugCCGCGGCAuacGAGAAGgGGCu -3'
miRNA:   3'- cuGCa---GGUGCCGUugcCUCUUCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 118174 0.66 0.937856
Target:  5'- ----aCUGCGGCcACGGGGGaaccaacGGCAGCu -3'
miRNA:   3'- cugcaGGUGCCGuUGCCUCU-------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 24155 0.66 0.938336
Target:  5'- -cCGUCgGCcuGGUAGCuGuGAAGCGGCa -3'
miRNA:   3'- cuGCAGgUG--CCGUUGcCuCUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 95340 0.66 0.943007
Target:  5'- gGGCG-CCGCGaaacggacuCGGCGGGGcGGCGGCc -3'
miRNA:   3'- -CUGCaGGUGCc--------GUUGCCUCuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 104703 0.66 0.947441
Target:  5'- uGACGgagcaCCagACGGCuGCGcGAGGucgcgcAGCAGCg -3'
miRNA:   3'- -CUGCa----GG--UGCCGuUGC-CUCU------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 100483 0.68 0.885573
Target:  5'- cGGCGgCCAgGGCccUGGAGggGUuGCg -3'
miRNA:   3'- -CUGCaGGUgCCGuuGCCUCuuCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 37556 0.67 0.904665
Target:  5'- cGACGgcggCgACGaccGCGACGGAGGcggcaagucucgcGGCGGCc -3'
miRNA:   3'- -CUGCa---GgUGC---CGUUGCCUCU-------------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 99872 0.67 0.911394
Target:  5'- --aG-CCGCGGUGGCGGGGAAGUc-- -3'
miRNA:   3'- cugCaGGUGCCGUUGCCUCUUCGucg -5'
24349 5' -54.9 NC_005264.1 + 106529 0.67 0.917261
Target:  5'- cGGCGgcagCGCGGCcGCGGAguuuuucgcgaGAAGCgAGCa -3'
miRNA:   3'- -CUGCag--GUGCCGuUGCCU-----------CUUCG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.