Results 21 - 40 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24350 | 3' | -63.8 | NC_005264.1 | + | 27264 | 0.73 | 0.234526 |
Target: 5'- cCACCCGuaguCGCGAGCgaCG-CGCGGCUUCu -3' miRNA: 3'- -GUGGGCu---GUGCUCG--GCgGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 36804 | 0.73 | 0.234526 |
Target: 5'- gUACUgGAgAgGAGCCGCCGCgGGCCa- -3' miRNA: 3'- -GUGGgCUgUgCUCGGCGGCG-CCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 158215 | 0.73 | 0.223978 |
Target: 5'- gGCCCGGCGauuuuCGAgaacgcgccuacGCCGCCGCGGCgCUg -3' miRNA: 3'- gUGGGCUGU-----GCU------------CGGCGGCGCCG-GAg -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 155830 | 0.73 | 0.234526 |
Target: 5'- gUACUgGAgAgGAGCCGCCGCgGGCCa- -3' miRNA: 3'- -GUGGgCUgUgCUCGGCGGCG-CCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 39188 | 0.73 | 0.223978 |
Target: 5'- gGCCCGGCGauuuuCGAgaacgcgccuacGCCGCCGCGGCgCUg -3' miRNA: 3'- gUGGGCUGU-----GCU------------CGGCGGCGCCG-GAg -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 141602 | 0.73 | 0.251128 |
Target: 5'- aCACUCGAgccgucgucaaCGCGgaaAGCCGUCGCGGCCg- -3' miRNA: 3'- -GUGGGCU-----------GUGC---UCGGCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 63079 | 0.73 | 0.245489 |
Target: 5'- aGCUCGGCGaGGGCCGUCGCGGaaaggccuaCCUCg -3' miRNA: 3'- gUGGGCUGUgCUCGGCGGCGCC---------GGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 44791 | 0.73 | 0.245489 |
Target: 5'- gUugCCGACGCcgcGGUCGCCGCGGCaaacCUCc -3' miRNA: 3'- -GugGGCUGUGc--UCGGCGGCGCCG----GAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 124425 | 0.72 | 0.287223 |
Target: 5'- aACUCGcagaGCGCGuGCU-CCGCGGCCUCg -3' miRNA: 3'- gUGGGC----UGUGCuCGGcGGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 61486 | 0.72 | 0.274756 |
Target: 5'- gCGCgCCGACGC--GCC-CCGCGGUCUCg -3' miRNA: 3'- -GUG-GGCUGUGcuCGGcGGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 12 | 0.72 | 0.287223 |
Target: 5'- uCGCaCCGGCACGccauaaCGCCGCGGCCc- -3' miRNA: 3'- -GUG-GGCUGUGCucg---GCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 92427 | 0.72 | 0.262727 |
Target: 5'- aACCUGA-ACGAGCCGCa-CGGUCUCg -3' miRNA: 3'- gUGGGCUgUGCUCGGCGgcGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 48934 | 0.71 | 0.320324 |
Target: 5'- uCGCCCGAUgggcacuuguGCGGGCCGCUGCGcuCCa- -3' miRNA: 3'- -GUGGGCUG----------UGCUCGGCGGCGCc-GGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 18213 | 0.71 | 0.293621 |
Target: 5'- uUACCUGACACGAGCgGCuagcuagugaCGCgGGCCg- -3' miRNA: 3'- -GUGGGCUGUGCUCGgCG----------GCG-CCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 20236 | 0.71 | 0.313482 |
Target: 5'- cCGCgCGugACGGGUgggcagggguugCGgCGCGGCCUCg -3' miRNA: 3'- -GUGgGCugUGCUCG------------GCgGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 97269 | 0.71 | 0.320324 |
Target: 5'- gGCCuUGGCACGguAGUgGCCGCuGCCUCg -3' miRNA: 3'- gUGG-GCUGUGC--UCGgCGGCGcCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 127320 | 0.71 | 0.327278 |
Target: 5'- gCGCCCgugggcGACGgGGGCaccugCGCCGCGGCgUCg -3' miRNA: 3'- -GUGGG------CUGUgCUCG-----GCGGCGCCGgAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 154595 | 0.71 | 0.293621 |
Target: 5'- aCGCCagcgaagaGGgGgGAGCUGCUGCGGCUUCg -3' miRNA: 3'- -GUGGg-------CUgUgCUCGGCGGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 8293 | 0.71 | 0.327278 |
Target: 5'- gCGCCCgugggcGACGgGGGCaccugCGCCGCGGCgUCg -3' miRNA: 3'- -GUGGG------CUGUgCUCG-----GCGGCGCCGgAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 121199 | 0.71 | 0.320324 |
Target: 5'- gACCCGGC-CGcGCUGCCGCaucuGGCCa- -3' miRNA: 3'- gUGGGCUGuGCuCGGCGGCG----CCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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