miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 5' -47.2 NC_005264.1 + 162825 0.68 0.998278
Target:  5'- -cGGGGCgcaguuucugucGCGAUAUAgcg-UGGCGCg -3'
miRNA:   3'- gaCUCCGa-----------UGCUAUAUguuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 162652 0.72 0.981291
Target:  5'- -cGAGGCUcggaagcgcgccgGCGGgucguaggUGUACGGUcGGCGCg -3'
miRNA:   3'- gaCUCCGA-------------UGCU--------AUAUGUUAaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 159720 0.66 0.999917
Target:  5'- -cGAcGGCUACGAc-UACGAagGGgGCc -3'
miRNA:   3'- gaCU-CCGAUGCUauAUGUUaaCCgCG- -5'
24350 5' -47.2 NC_005264.1 + 146916 0.69 0.996006
Target:  5'- aCUGgguGGGCUAuCGGg--GCAGUaguucgUGGCGCa -3'
miRNA:   3'- -GAC---UCCGAU-GCUauaUGUUA------ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 145180 1.15 0.009867
Target:  5'- cCUGAGGCUACGAUAUACAAUUGGCGCg -3'
miRNA:   3'- -GACUCCGAUGCUAUAUGUUAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 142855 0.69 0.997606
Target:  5'- aUGAGGC-ACGuccuUGCGAgcgaaGGCGCu -3'
miRNA:   3'- gACUCCGaUGCuau-AUGUUaa---CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 140671 0.66 0.999858
Target:  5'- -aGGGGCUGuugUGAcGUACGGcccgcGGCGCa -3'
miRNA:   3'- gaCUCCGAU---GCUaUAUGUUaa---CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 140542 0.7 0.992608
Target:  5'- uCUGAGGC-GCGGcUGggaugGCAGaagGGCGCg -3'
miRNA:   3'- -GACUCCGaUGCU-AUa----UGUUaa-CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 140025 0.66 0.999917
Target:  5'- gCUGAGGCUguaccacaACGGUcccucugACAgg-GGCGUg -3'
miRNA:   3'- -GACUCCGA--------UGCUAua-----UGUuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 137272 0.69 0.996616
Target:  5'- gUGuGGUUGCGAUuccGCGgcGUUGGCGg -3'
miRNA:   3'- gACuCCGAUGCUAua-UGU--UAACCGCg -5'
24350 5' -47.2 NC_005264.1 + 137075 0.72 0.974063
Target:  5'- --cAGGCgaaGCGGUGc-CAAUUGGCGCa -3'
miRNA:   3'- gacUCCGa--UGCUAUauGUUAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 136434 0.67 0.999699
Target:  5'- uCUGAGGCggaaGA---GCAug-GGCGCu -3'
miRNA:   3'- -GACUCCGaug-CUauaUGUuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 134089 0.67 0.999402
Target:  5'- gCUGucAGGCUGgGAgacGUACAAaguuUUcGGCGCa -3'
miRNA:   3'- -GAC--UCCGAUgCUa--UAUGUU----AA-CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 133307 0.66 0.999917
Target:  5'- gUGAcGCUGCGAgagACGGU-GGCGa -3'
miRNA:   3'- gACUcCGAUGCUauaUGUUAaCCGCg -5'
24350 5' -47.2 NC_005264.1 + 133281 0.71 0.988792
Target:  5'- -cGGGGCUgGCGAUAaACAAaagGGCGg -3'
miRNA:   3'- gaCUCCGA-UGCUAUaUGUUaa-CCGCg -5'
24350 5' -47.2 NC_005264.1 + 125856 0.66 0.999891
Target:  5'- -gGAGGCgGCGGcg-ACua-UGGCGCc -3'
miRNA:   3'- gaCUCCGaUGCUauaUGuuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 125158 0.69 0.997851
Target:  5'- gUG-GGCUGCGAUGcuuguggGGCGCc -3'
miRNA:   3'- gACuCCGAUGCUAUauguuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 122645 0.67 0.999402
Target:  5'- -gGGGGCcGCGAgg-GCg---GGCGCg -3'
miRNA:   3'- gaCUCCGaUGCUauaUGuuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 121894 0.79 0.787832
Target:  5'- gCUGcGGCUGCGAUcgACcgg-GGCGCg -3'
miRNA:   3'- -GACuCCGAUGCUAuaUGuuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 118535 0.66 0.999917
Target:  5'- --aGGGCUaucggGCGAUacuacgcgcaaGUGCAuGUUGGCGUg -3'
miRNA:   3'- gacUCCGA-----UGCUA-----------UAUGU-UAACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.