miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24351 3' -56.5 NC_005264.1 + 42071 0.66 0.906323
Target:  5'- -cGGCGCGUGGCg-UCaGCUGcGCCGg -3'
miRNA:   3'- gaCUGCGUAUCGagAGgCGAUcCGGC- -5'
24351 3' -56.5 NC_005264.1 + 91938 0.66 0.900054
Target:  5'- aCUGugGUGUAGCggcaugCCGaugaccagGGGCCGa -3'
miRNA:   3'- -GACugCGUAUCGaga---GGCga------UCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 123695 0.66 0.900054
Target:  5'- -gGACGUcgGUGGCUCacaGC-AGGCCGg -3'
miRNA:   3'- gaCUGCG--UAUCGAGaggCGaUCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 35472 0.66 0.900054
Target:  5'- cCUGACGCGagAGUg--CCGC--GGCCGa -3'
miRNA:   3'- -GACUGCGUa-UCGagaGGCGauCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 8459 0.66 0.900054
Target:  5'- uCUGAC-CAUAGCaUCcgCCaGCUGGGUCc -3'
miRNA:   3'- -GACUGcGUAUCG-AGa-GG-CGAUCCGGc -5'
24351 3' -56.5 NC_005264.1 + 41427 0.66 0.886826
Target:  5'- -nGGCGCcgGGCUC-CUGCgggcgacGGCCa -3'
miRNA:   3'- gaCUGCGuaUCGAGaGGCGau-----CCGGc -5'
24351 3' -56.5 NC_005264.1 + 61492 0.66 0.886826
Target:  5'- -cGACGCGccccGCggUCUCgGCUAGcGCCGc -3'
miRNA:   3'- gaCUGCGUau--CG--AGAGgCGAUC-CGGC- -5'
24351 3' -56.5 NC_005264.1 + 160454 0.66 0.886826
Target:  5'- -nGGCGCcgGGCUC-CUGCgggcgacGGCCa -3'
miRNA:   3'- gaCUGCGuaUCGAGaGGCGau-----CCGGc -5'
24351 3' -56.5 NC_005264.1 + 126852 0.66 0.872703
Target:  5'- gCUG-CGCGUuucGCUCUCCGCgcccccuccAGGCg- -3'
miRNA:   3'- -GACuGCGUAu--CGAGAGGCGa--------UCCGgc -5'
24351 3' -56.5 NC_005264.1 + 80993 0.66 0.872703
Target:  5'- -cGACGCcgacGUGGC-CUCCGCcuugguGGUCGa -3'
miRNA:   3'- gaCUGCG----UAUCGaGAGGCGau----CCGGC- -5'
24351 3' -56.5 NC_005264.1 + 79646 0.67 0.865318
Target:  5'- --aGCGCAUAGUUCgcgCCGCgccuGCCGc -3'
miRNA:   3'- gacUGCGUAUCGAGa--GGCGauc-CGGC- -5'
24351 3' -56.5 NC_005264.1 + 153349 0.67 0.865318
Target:  5'- cCUGACGC-UGGCUgaCuCGCUgacgcgAGGUCGg -3'
miRNA:   3'- -GACUGCGuAUCGAgaG-GCGA------UCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 34322 0.67 0.865318
Target:  5'- cCUGACGC-UGGCUgaCuCGCUgacgcgAGGUCGg -3'
miRNA:   3'- -GACUGCGuAUCGAgaG-GCGA------UCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 101612 0.67 0.857725
Target:  5'- -cGugGCGUAGUUCUCUggGCUcuuGCCGc -3'
miRNA:   3'- gaCugCGUAUCGAGAGG--CGAuc-CGGC- -5'
24351 3' -56.5 NC_005264.1 + 47678 0.67 0.849928
Target:  5'- -aGACGCGuUGGCggUUUCCGCUuuuGcGCCGu -3'
miRNA:   3'- gaCUGCGU-AUCG--AGAGGCGAu--C-CGGC- -5'
24351 3' -56.5 NC_005264.1 + 39633 0.67 0.841936
Target:  5'- -cGGCGCuGUGGUUUUgCCGCgcGGCCu -3'
miRNA:   3'- gaCUGCG-UAUCGAGA-GGCGauCCGGc -5'
24351 3' -56.5 NC_005264.1 + 64295 0.67 0.841936
Target:  5'- aCUGuuCGCGUccauGC-CUCCGCagAGGCCa -3'
miRNA:   3'- -GACu-GCGUAu---CGaGAGGCGa-UCCGGc -5'
24351 3' -56.5 NC_005264.1 + 24423 0.67 0.833753
Target:  5'- -cGACGCAaAGCacguUCUcgCCGCUAuGGCCc -3'
miRNA:   3'- gaCUGCGUaUCG----AGA--GGCGAU-CCGGc -5'
24351 3' -56.5 NC_005264.1 + 97059 0.67 0.825389
Target:  5'- --aGCGCAUGG-UCUCCGUgAGGCgGa -3'
miRNA:   3'- gacUGCGUAUCgAGAGGCGaUCCGgC- -5'
24351 3' -56.5 NC_005264.1 + 81057 0.68 0.820286
Target:  5'- aCUGGCGCGUGGUUUaucgacggcaaccggUCUGCcgagAGcGCCGg -3'
miRNA:   3'- -GACUGCGUAUCGAG---------------AGGCGa---UC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.