miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 3' -58.7 NC_005264.1 + 69596 0.66 0.847786
Target:  5'- aCGCGccgaCGaGGGCGCCGcCCGgcgUGAg -3'
miRNA:   3'- aGCGCca--GC-CCCGUGGC-GGCauaACU- -5'
24354 3' -58.7 NC_005264.1 + 157007 0.66 0.847786
Target:  5'- cCGCGGccaggcgagUGGcGGcCACCGCCGccggacUAUUGAa -3'
miRNA:   3'- aGCGCCa--------GCC-CC-GUGGCGGC------AUAACU- -5'
24354 3' -58.7 NC_005264.1 + 37980 0.66 0.847786
Target:  5'- cCGCGGccaggcgagUGGcGGcCACCGCCGccggacUAUUGAa -3'
miRNA:   3'- aGCGCCa--------GCC-CC-GUGGCGGC------AUAACU- -5'
24354 3' -58.7 NC_005264.1 + 47016 0.66 0.839961
Target:  5'- gCGCGGUCaguccuGGGGCGagcgaCGuuGcAUUGAu -3'
miRNA:   3'- aGCGCCAG------CCCCGUg----GCggCaUAACU- -5'
24354 3' -58.7 NC_005264.1 + 92684 0.66 0.83678
Target:  5'- aUUGCGGUagUGaGGCGCCGCCGcggcagcaagcacGUUGAg -3'
miRNA:   3'- -AGCGCCA--GCcCCGUGGCGGCa------------UAACU- -5'
24354 3' -58.7 NC_005264.1 + 100564 0.66 0.831958
Target:  5'- aUCGCGGgacaaGGGcGCAaagCGCCGUcGUUGu -3'
miRNA:   3'- -AGCGCCag---CCC-CGUg--GCGGCA-UAACu -5'
24354 3' -58.7 NC_005264.1 + 162081 0.66 0.823783
Target:  5'- gUCGCGua-GGGGCuCCGCCGa----- -3'
miRNA:   3'- -AGCGCcagCCCCGuGGCGGCauaacu -5'
24354 3' -58.7 NC_005264.1 + 84074 0.66 0.815445
Target:  5'- aUCGCGGUgGaaaGGGUGCuCGCgGcUAUUGAc -3'
miRNA:   3'- -AGCGCCAgC---CCCGUG-GCGgC-AUAACU- -5'
24354 3' -58.7 NC_005264.1 + 80123 0.67 0.798306
Target:  5'- -aGCGGUCcgcaaGGGGcCGCUGUCGUGgcUGGg -3'
miRNA:   3'- agCGCCAG-----CCCC-GUGGCGGCAUa-ACU- -5'
24354 3' -58.7 NC_005264.1 + 137209 0.67 0.798306
Target:  5'- aCGCGGagCGcGGCcccaccGCCGCCGUGUUc- -3'
miRNA:   3'- aGCGCCa-GCcCCG------UGGCGGCAUAAcu -5'
24354 3' -58.7 NC_005264.1 + 107220 0.67 0.78952
Target:  5'- gCGCGGUUGGcauucGGCGCCaGCCGc----- -3'
miRNA:   3'- aGCGCCAGCC-----CCGUGG-CGGCauaacu -5'
24354 3' -58.7 NC_005264.1 + 72468 0.67 0.78952
Target:  5'- cCGcCGGUCGGaucguguaccGGCAgCGUCGgcggGUUGAa -3'
miRNA:   3'- aGC-GCCAGCC----------CCGUgGCGGCa---UAACU- -5'
24354 3' -58.7 NC_005264.1 + 26197 0.67 0.771557
Target:  5'- aCGCGcGUCGaGGCuCCGCCGg---GAa -3'
miRNA:   3'- aGCGC-CAGCcCCGuGGCGGCauaaCU- -5'
24354 3' -58.7 NC_005264.1 + 122588 0.67 0.762396
Target:  5'- cCGC-GUUGGGGUACCGCaCGUc---- -3'
miRNA:   3'- aGCGcCAGCCCCGUGGCG-GCAuaacu -5'
24354 3' -58.7 NC_005264.1 + 44560 0.67 0.762396
Target:  5'- -gGUGGUCGGguuGGCgACCGCCGg----- -3'
miRNA:   3'- agCGCCAGCC---CCG-UGGCGGCauaacu -5'
24354 3' -58.7 NC_005264.1 + 61501 0.67 0.762396
Target:  5'- cCGCGGucUCGGcuaGCGCCGCgCGUAUa-- -3'
miRNA:   3'- aGCGCC--AGCCc--CGUGGCG-GCAUAacu -5'
24354 3' -58.7 NC_005264.1 + 42255 0.68 0.743755
Target:  5'- gUC-CGGcCGGGGC-CCGCC-UAUUGc -3'
miRNA:   3'- -AGcGCCaGCCCCGuGGCGGcAUAACu -5'
24354 3' -58.7 NC_005264.1 + 60898 0.68 0.743755
Target:  5'- cCGCGGU-GGGGCcgacGCCGCCa------ -3'
miRNA:   3'- aGCGCCAgCCCCG----UGGCGGcauaacu -5'
24354 3' -58.7 NC_005264.1 + 161282 0.68 0.743755
Target:  5'- gUC-CGGcCGGGGC-CCGCC-UAUUGc -3'
miRNA:   3'- -AGcGCCaGCCCCGuGGCGGcAUAACu -5'
24354 3' -58.7 NC_005264.1 + 32922 0.68 0.742813
Target:  5'- gCGCaGGggucgCGGGGCGCCGCgugagucUGUAUguuUGAu -3'
miRNA:   3'- aGCG-CCa----GCCCCGUGGCG-------GCAUA---ACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.