miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 148464 0.7 0.933544
Target:  5'- cGCCCGCGAGGGAAugaaGCGC-UCCa- -3'
miRNA:   3'- aUGGGCGUUUUUUUug--CGCGcAGGgu -5'
24357 5' -50.6 NC_005264.1 + 143772 0.69 0.952399
Target:  5'- cUAUgCGCG--GGAAGCGCGCuUCCCGc -3'
miRNA:   3'- -AUGgGCGUuuUUUUUGCGCGcAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 140690 0.81 0.450956
Target:  5'- gGCCCGCGGcgcaaucuAAGGCGCGCGUCCg- -3'
miRNA:   3'- aUGGGCGUUuu------UUUUGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 140352 0.66 0.994931
Target:  5'- aUGCCCGCAGuGAugcgauaggccGAGCGaaGCG-CCCAa -3'
miRNA:   3'- -AUGGGCGUUuUU-----------UUUGCg-CGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 139837 1.07 0.011519
Target:  5'- gUACCCGCAAAAAAAACGCGCGUCCCAu -3'
miRNA:   3'- -AUGGGCGUUUUUUUUGCGCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 139294 0.66 0.990955
Target:  5'- cAUCCGCGGu---AGCGCguaGCGUUCCGc -3'
miRNA:   3'- aUGGGCGUUuuuuUUGCG---CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 138798 0.66 0.990955
Target:  5'- -gUCCGCcauAGAGACGUGCGUCaCGa -3'
miRNA:   3'- auGGGCGuuuUUUUUGCGCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 135553 0.66 0.994931
Target:  5'- --aCCGCGAugacuuucGAGAAGcCGCGCGUCgCu -3'
miRNA:   3'- augGGCGUU--------UUUUUU-GCGCGCAGgGu -5'
24357 5' -50.6 NC_005264.1 + 133498 0.67 0.98272
Target:  5'- gUACCCgGCAGAcgucguagccgcaGGAGGCGCuGUGUCCa- -3'
miRNA:   3'- -AUGGG-CGUUU-------------UUUUUGCG-CGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 131939 0.66 0.993744
Target:  5'- gGCCuCGCAGuccuccccCGaCGCGUCCCc -3'
miRNA:   3'- aUGG-GCGUUuuuuuu--GC-GCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 130537 0.66 0.994931
Target:  5'- gACCUGCGcGAAGcgucgcGGCGCGUGUgCUAc -3'
miRNA:   3'- aUGGGCGUuUUUU------UUGCGCGCAgGGU- -5'
24357 5' -50.6 NC_005264.1 + 130423 0.69 0.967276
Target:  5'- -uCCUGCAGAGGGAGUG-GCGUUCCAg -3'
miRNA:   3'- auGGGCGUUUUUUUUGCgCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 127949 0.66 0.995662
Target:  5'- cUGCCCuCGAAGAAGGCG-GCGgCCUg -3'
miRNA:   3'- -AUGGGcGUUUUUUUUGCgCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 125788 0.68 0.970411
Target:  5'- cUGCCCGUAGuacccAAUGcCGUGUCCCc -3'
miRNA:   3'- -AUGGGCGUUuuuu-UUGC-GCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 124425 0.66 0.995662
Target:  5'- aACUCGCA----GAGCGCGUGcUCCgCGg -3'
miRNA:   3'- aUGGGCGUuuuuUUUGCGCGC-AGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 123705 0.66 0.993172
Target:  5'- aUACCUGCGucggggcGAGugGCGcCGCGUCCaCGa -3'
miRNA:   3'- -AUGGGCGUu------UUUuuUGC-GCGCAGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 123659 0.67 0.989652
Target:  5'- gAUgCGCGGuAGAGuCGCGCG-CCCAg -3'
miRNA:   3'- aUGgGCGUUuUUUUuGCGCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 123366 0.72 0.868447
Target:  5'- cUGCCCcugGCGGcu-GAGCGCGCGUCgCAg -3'
miRNA:   3'- -AUGGG---CGUUuuuUUUGCGCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 121763 0.7 0.948068
Target:  5'- gGCCCGUcuucuAGGuuuAACgGCGCGUCCCc -3'
miRNA:   3'- aUGGGCGu----UUUuu-UUG-CGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 121616 0.73 0.8357
Target:  5'- cGCCCGCGAGgucuccaaagGAGAAgGCGCGagCCGa -3'
miRNA:   3'- aUGGGCGUUU----------UUUUUgCGCGCagGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.