miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 160399 0.67 0.989652
Target:  5'- --gCCGCAAGGAAGAgugcaggcugcUGUGCG-CCCAg -3'
miRNA:   3'- augGGCGUUUUUUUU-----------GCGCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 157293 0.66 0.990955
Target:  5'- cACCUGCGAAGAGAAacccgcucCGCGCGagacgCCgCGg -3'
miRNA:   3'- aUGGGCGUUUUUUUU--------GCGCGCa----GG-GU- -5'
24357 5' -50.6 NC_005264.1 + 74061 0.66 0.994104
Target:  5'- gGCCCuCGAAGGGAACGCgGCaUCCgGa -3'
miRNA:   3'- aUGGGcGUUUUUUUUGCG-CGcAGGgU- -5'
24357 5' -50.6 NC_005264.1 + 124425 0.66 0.995662
Target:  5'- aACUCGCA----GAGCGCGUGcUCCgCGg -3'
miRNA:   3'- aUGGGCGUuuuuUUUGCGCGC-AGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 36958 0.67 0.982923
Target:  5'- aGCCCGCAcgacaGAGGuuGCGCGCuggCgCCAu -3'
miRNA:   3'- aUGGGCGU-----UUUUuuUGCGCGca-G-GGU- -5'
24357 5' -50.6 NC_005264.1 + 148571 0.67 0.989514
Target:  5'- gGCCCGCGAcgugcccGAGGAACGCGCu----- -3'
miRNA:   3'- aUGGGCGUU-------UUUUUUGCGCGcagggu -5'
24357 5' -50.6 NC_005264.1 + 58497 0.66 0.990955
Target:  5'- aUGCgCGCAA---GAGCGCgguGCGUCCUc -3'
miRNA:   3'- -AUGgGCGUUuuuUUUGCG---CGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 127949 0.66 0.995662
Target:  5'- cUGCCCuCGAAGAAGGCG-GCGgCCUg -3'
miRNA:   3'- -AUGGGcGUUUUUUUUGCgCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 34425 0.67 0.989652
Target:  5'- uUGCCUGCGAguGAGGAAUcuguuaGUGUCCCGg -3'
miRNA:   3'- -AUGGGCGUU--UUUUUUGcg----CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 38769 0.66 0.995662
Target:  5'- -cCCUGcCAGAAGGGuACGUGCcucGUCCCGg -3'
miRNA:   3'- auGGGC-GUUUUUUU-UGCGCG---CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 33701 0.66 0.990955
Target:  5'- gACCCGCGAAGAAAGCGauCGg-CUAu -3'
miRNA:   3'- aUGGGCGUUUUUUUUGCgcGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 123659 0.67 0.989652
Target:  5'- gAUgCGCGGuAGAGuCGCGCG-CCCAg -3'
miRNA:   3'- aUGgGCGUUuUUUUuGCGCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 159135 0.66 0.992125
Target:  5'- cGCCCGCGGcAAGuACuGUGCG-CCCu -3'
miRNA:   3'- aUGGGCGUUuUUUuUG-CGCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 12913 0.66 0.993744
Target:  5'- gGCCuCGCAGuccuccccCGaCGCGUCCCc -3'
miRNA:   3'- aUGG-GCGUUuuuuuu--GC-GCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 116367 0.66 0.994931
Target:  5'- aACCCGCGAcuccacaggcAAAGAGCGcCGCGcaaaagCCgCAg -3'
miRNA:   3'- aUGGGCGUU----------UUUUUUGC-GCGCa-----GG-GU- -5'
24357 5' -50.6 NC_005264.1 + 30357 0.66 0.995452
Target:  5'- -cCCCGCAGGAgccccuucggcgccGccGCGuCGCGUCUCGg -3'
miRNA:   3'- auGGGCGUUUU--------------UuuUGC-GCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 31698 0.68 0.976024
Target:  5'- cUGCCCGcCAAAGGucGCGCGCGgggCgUAc -3'
miRNA:   3'- -AUGGGC-GUUUUUuuUGCGCGCa--GgGU- -5'
24357 5' -50.6 NC_005264.1 + 78662 0.67 0.98272
Target:  5'- gUACgCCGCAGAAGuaaacagguccGGCGCGCGcgcugcgaccacuUCCCGg -3'
miRNA:   3'- -AUG-GGCGUUUUUu----------UUGCGCGC-------------AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 51357 0.67 0.984852
Target:  5'- --gCCGaCAGGAAGGGCGCaGCGUCUg- -3'
miRNA:   3'- augGGC-GUUUUUUUUGCG-CGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 44944 0.67 0.988207
Target:  5'- gGCCCGUu------GCGCGCGugacUCCCu -3'
miRNA:   3'- aUGGGCGuuuuuuuUGCGCGC----AGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.