Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24359 | 3' | -52 | NC_005264.1 | + | 147585 | 0.7 | 0.883571 |
Target: 5'- aCgGGGAacGGUcgCAGGCGCAugcAGAACGACc -3' miRNA: 3'- aGaCCCU--UCG--GUCCGUGU---UCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 50577 | 0.7 | 0.883571 |
Target: 5'- --cGGGAAGCgCAcgcGGCGCu-GAGCAGCc -3' miRNA: 3'- agaCCCUUCG-GU---CCGUGuuCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 153792 | 0.7 | 0.890683 |
Target: 5'- aUCUGGcGGugacuuuccccaAGCCAGGCGCGaacgcgucGGGACuAACg -3' miRNA: 3'- -AGACC-CU------------UCGGUCCGUGU--------UCUUG-UUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 54532 | 0.7 | 0.89755 |
Target: 5'- uUCUGGc--GCgAGGCAacgaaGAGAGCAGCa -3' miRNA: 3'- -AGACCcuuCGgUCCGUg----UUCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 60880 | 0.69 | 0.921926 |
Target: 5'- --cGGGAugacaccGGCCAGGC---GGGACGGCg -3' miRNA: 3'- agaCCCU-------UCGGUCCGuguUCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 64397 | 0.69 | 0.9225 |
Target: 5'- cUCU-GGAAGCCcGGC-CAAGGcCGACg -3' miRNA: 3'- -AGAcCCUUCGGuCCGuGUUCUuGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 136649 | 0.69 | 0.928097 |
Target: 5'- -gUGGGAAGUgGGGCGCc--AACGGCc -3' miRNA: 3'- agACCCUUCGgUCCGUGuucUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 6775 | 0.69 | 0.933436 |
Target: 5'- aCaaGGGAGCCAGGgAUggGuGCGGCg -3' miRNA: 3'- aGacCCUUCGGUCCgUGuuCuUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 50261 | 0.69 | 0.933436 |
Target: 5'- cUCUGGGGAcGCCAuGGcCGCgGAGAucacCAACg -3' miRNA: 3'- -AGACCCUU-CGGU-CC-GUG-UUCUu---GUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 125801 | 0.69 | 0.933436 |
Target: 5'- aCaaGGGAGCCAGGgAUggGuGCGGCg -3' miRNA: 3'- aGacCCUUCGGUCCgUGuuCuUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 58475 | 0.68 | 0.943344 |
Target: 5'- gUCUGGGAAcGCCugacggucGGCccGCcuGAGCGGCa -3' miRNA: 3'- -AGACCCUU-CGGu-------CCG--UGuuCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 41857 | 0.68 | 0.947917 |
Target: 5'- -aUGGG-AGCuCGGGgGgGGGGGCAACg -3' miRNA: 3'- agACCCuUCG-GUCCgUgUUCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 160883 | 0.68 | 0.947917 |
Target: 5'- -aUGGG-AGCuCGGGgGgGGGGGCAACg -3' miRNA: 3'- agACCCuUCG-GUCCgUgUUCUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 106861 | 0.68 | 0.947917 |
Target: 5'- aUCUGcGGGgucauGGgCGGGCACGAacGCAGCg -3' miRNA: 3'- -AGAC-CCU-----UCgGUCCGUGUUcuUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 62246 | 0.68 | 0.956311 |
Target: 5'- --cGGGAAGCCgccacAGGCuguACAAcGACGGCg -3' miRNA: 3'- agaCCCUUCGG-----UCCG---UGUUcUUGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 32685 | 0.68 | 0.956311 |
Target: 5'- cUCUGGuGGcGGCCAGGCuuuuaGCGGGggUGAg -3' miRNA: 3'- -AGACC-CU-UCGGUCCG-----UGUUCuuGUUg -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 150795 | 0.68 | 0.956311 |
Target: 5'- -aUGGGGGcGUguGGgGCAGGAgcGCAGCg -3' miRNA: 3'- agACCCUU-CGguCCgUGUUCU--UGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 146611 | 0.67 | 0.963734 |
Target: 5'- aCUGGGAGG--GGGCucaGAGggUAGCg -3' miRNA: 3'- aGACCCUUCggUCCGug-UUCuuGUUG- -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 123386 | 0.67 | 0.963734 |
Target: 5'- cCUGuuGGAGGCguGGUGCGAGAuGCAGa -3' miRNA: 3'- aGAC--CCUUCGguCCGUGUUCU-UGUUg -5' |
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24359 | 3' | -52 | NC_005264.1 | + | 18525 | 0.67 | 0.963734 |
Target: 5'- aUCgGGGgcGCCgucucccccugaGGGCGCGccggcgucagucGGAGCGGCa -3' miRNA: 3'- -AGaCCCuuCGG------------UCCGUGU------------UCUUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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