Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24360 | 5' | -52.6 | NC_005264.1 | + | 137990 | 1.13 | 0.003587 |
Target: 5'- gGUAAGACUUCGCCGUGCGGAAGCAGCg -3' miRNA: 3'- -CAUUCUGAAGCGGCACGCCUUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 41495 | 0.76 | 0.590103 |
Target: 5'- cGUAAaGC-UCGCCaacuccuccuuaagGUGCGGGAGCAGCc -3' miRNA: 3'- -CAUUcUGaAGCGG--------------CACGCCUUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 43781 | 0.75 | 0.655975 |
Target: 5'- -gGAGAC-UCGCCGUggguGCGGGGcGCAGUu -3' miRNA: 3'- caUUCUGaAGCGGCA----CGCCUU-CGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 162807 | 0.75 | 0.655975 |
Target: 5'- -gGAGAC-UCGCCGUggguGCGGGGcGCAGUu -3' miRNA: 3'- caUUCUGaAGCGGCA----CGCCUU-CGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 124453 | 0.73 | 0.727098 |
Target: 5'- -cGAGAUcUUGUCuuucgagagcgagGUGCGGAAGCGGCg -3' miRNA: 3'- caUUCUGaAGCGG-------------CACGCCUUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 89963 | 0.73 | 0.767628 |
Target: 5'- --cAGGCaa-GCCGUGUGGAAGCcuuGCa -3' miRNA: 3'- cauUCUGaagCGGCACGCCUUCGu--CG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 19940 | 0.73 | 0.767628 |
Target: 5'- -gAGGACgcaucgUCGCCGUGaUGGAGaaaggcGCGGCg -3' miRNA: 3'- caUUCUGa-----AGCGGCAC-GCCUU------CGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 54209 | 0.72 | 0.814121 |
Target: 5'- aGUGGGACcUCGCCaauagaggccuGUGUcGAGGCGGCc -3' miRNA: 3'- -CAUUCUGaAGCGG-----------CACGcCUUCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 56801 | 0.72 | 0.777218 |
Target: 5'- -gGAGGCgcaUCGCCgGUGuCGGucGGCGGCg -3' miRNA: 3'- caUUCUGa--AGCGG-CAC-GCCu-UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 20449 | 0.72 | 0.814121 |
Target: 5'- --uGGGCguaGCCG-GCGGAcAGCGGCg -3' miRNA: 3'- cauUCUGaagCGGCaCGCCU-UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 96627 | 0.71 | 0.840016 |
Target: 5'- -cAAGucCUUCGCUGgccGCGGAGGC-GCa -3' miRNA: 3'- caUUCu-GAAGCGGCa--CGCCUUCGuCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 36243 | 0.7 | 0.871743 |
Target: 5'- -aGGGGCggaGCCGcacgugGCGGAAGCGGg -3' miRNA: 3'- caUUCUGaagCGGCa-----CGCCUUCGUCg -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 95456 | 0.7 | 0.886283 |
Target: 5'- ----cGCUaccgCGCCG-GCGGgcGCAGCg -3' miRNA: 3'- cauucUGAa---GCGGCaCGCCuuCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 5266 | 0.7 | 0.893203 |
Target: 5'- -gGAGGCgagUCgcgGCCGgacgGCGGGgcGGCGGCu -3' miRNA: 3'- caUUCUGa--AG---CGGCa---CGCCU--UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 10400 | 0.7 | 0.864133 |
Target: 5'- -gGAGGgaUCGUCGaGCGGGaucguGGCAGCa -3' miRNA: 3'- caUUCUgaAGCGGCaCGCCU-----UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 30311 | 0.7 | 0.893203 |
Target: 5'- -----cCUUCGCCGUcGCGGAAGUcgaccucucccgAGCu -3' miRNA: 3'- cauucuGAAGCGGCA-CGCCUUCG------------UCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 124293 | 0.7 | 0.893203 |
Target: 5'- -gGAGGCgagUCgcgGCCGgacgGCGGGgcGGCGGCu -3' miRNA: 3'- caUUCUGa--AG---CGGCa---CGCCU--UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 149338 | 0.7 | 0.893203 |
Target: 5'- -----cCUUCGCCGUcGCGGAAGUcgaccucucccgAGCu -3' miRNA: 3'- cauucuGAAGCGGCA-CGCCUUCG------------UCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 129427 | 0.7 | 0.864133 |
Target: 5'- -gGAGGgaUCGUCGaGCGGGaucguGGCAGCa -3' miRNA: 3'- caUUCUgaAGCGGCaCGCCU-----UCGUCG- -5' |
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24360 | 5' | -52.6 | NC_005264.1 | + | 27436 | 0.7 | 0.86336 |
Target: 5'- aUGAGGCUUucagccagaccugCGCCGaGCGGc-GCAGCa -3' miRNA: 3'- cAUUCUGAA-------------GCGGCaCGCCuuCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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