miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24361 5' -58.4 NC_005264.1 + 110859 0.68 0.74466
Target:  5'- cCUCUCgGCGAagaUCGAGcgugaGCGCGCCGaCa -3'
miRNA:   3'- -GAGAGgCGCU---GGCUCa----UGCGUGGC-Ga -5'
24361 5' -58.4 NC_005264.1 + 153947 0.66 0.824833
Target:  5'- gUCUCCaGCGACaCGuuGUACGUACagaGCc -3'
miRNA:   3'- gAGAGG-CGCUG-GCu-CAUGCGUGg--CGa -5'
24361 5' -58.4 NC_005264.1 + 13410 0.71 0.557795
Target:  5'- gCUCUCCGC-ACCG-GcGCGCgACCGCc -3'
miRNA:   3'- -GAGAGGCGcUGGCuCaUGCG-UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 45329 0.68 0.715953
Target:  5'- -----aGCGACCGcAG-ACGCGCCGCg -3'
miRNA:   3'- gagaggCGCUGGC-UCaUGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 5003 0.67 0.763345
Target:  5'- uCUCgUCCGCGccggggucgccGCgGAGUACGuCACCGg- -3'
miRNA:   3'- -GAG-AGGCGC-----------UGgCUCAUGC-GUGGCga -5'
24361 5' -58.4 NC_005264.1 + 33276 0.66 0.824833
Target:  5'- --aUCCGCGcccCUGAGgGCgGCGCCGCa -3'
miRNA:   3'- gagAGGCGCu--GGCUCaUG-CGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 132274 0.68 0.715953
Target:  5'- cCUCUCCuGCGACCccgccGGUagaagugaucGCGaCACCGCg -3'
miRNA:   3'- -GAGAGG-CGCUGGc----UCA----------UGC-GUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 95504 0.66 0.828126
Target:  5'- cCUCUUCGCGGCggCGAucGUACGUgacguuauggaaggcGCCGCc -3'
miRNA:   3'- -GAGAGGCGCUG--GCU--CAUGCG---------------UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 104312 0.66 0.833014
Target:  5'- uUUUUCGUGACCuuGAGgcGCGaCGCCGCUu -3'
miRNA:   3'- gAGAGGCGCUGG--CUCa-UGC-GUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 33488 0.67 0.790524
Target:  5'- cCUCguUCCGCGcuuGCUcAGUGCGCGUCGCUg -3'
miRNA:   3'- -GAG--AGGCGC---UGGcUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 128564 0.68 0.74466
Target:  5'- aUUUCCGCGGCgGAGcgcagcACGCggauuACCGCg -3'
miRNA:   3'- gAGAGGCGCUGgCUCa-----UGCG-----UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 104800 0.68 0.735173
Target:  5'- cCUCuUUCGCGAgaCGAGcGgGCGCCGCa -3'
miRNA:   3'- -GAG-AGGCGCUg-GCUCaUgCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 101401 0.67 0.781588
Target:  5'- -aCUCgGCG-CCGAGgaGCGgGCCGCc -3'
miRNA:   3'- gaGAGgCGCuGGCUCa-UGCgUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 5232 0.67 0.789636
Target:  5'- uUCuUCCGCGGCCucGGGUACGUuuagagcGCCGg- -3'
miRNA:   3'- gAG-AGGCGCUGG--CUCAUGCG-------UGGCga -5'
24361 5' -58.4 NC_005264.1 + 41046 0.67 0.807981
Target:  5'- -aCUCCccagacgguacgGCG-CCGGGggACGCGCCGUUa -3'
miRNA:   3'- gaGAGG------------CGCuGGCUCa-UGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 132570 0.66 0.816486
Target:  5'- gUCgUCGCGGCCGcgcuacacuucGGUGCagcgugGCACCGCUu -3'
miRNA:   3'- gAGaGGCGCUGGC-----------UCAUG------CGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 21234 0.76 0.303761
Target:  5'- gCUUUCCGCGuugacgacgGCuCGAGUguGCGCGCCGCg -3'
miRNA:   3'- -GAGAGGCGC---------UG-GCUCA--UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 93034 0.71 0.548047
Target:  5'- gUCgUCCGCG-CCGAaUGCGUGCUGCUg -3'
miRNA:   3'- gAG-AGGCGCuGGCUcAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 85069 0.69 0.655938
Target:  5'- gUCUCUGCGGCCGcgucgucagauucGGaUACGgCGCCGUa -3'
miRNA:   3'- gAGAGGCGCUGGC-------------UC-AUGC-GUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 111836 0.69 0.676766
Target:  5'- uUCUCCGCGAgUaucuucCGCACCGCUg -3'
miRNA:   3'- gAGAGGCGCUgGcucau-GCGUGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.