miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24365 5' -52.8 NC_005264.1 + 30838 0.66 0.982088
Target:  5'- cGGGCuCGCGucGUCGUCGgcggcGGCGCg -3'
miRNA:   3'- aCUUG-GCGCc-CAGUAGCauaa-CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 149864 0.66 0.982088
Target:  5'- cGGGCuCGCGucGUCGUCGgcggcGGCGCg -3'
miRNA:   3'- aCUUG-GCGCc-CAGUAGCauaa-CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 145922 0.66 0.982088
Target:  5'- -cGGCgGCGGGUCAgCGcg--GGCAUg -3'
miRNA:   3'- acUUGgCGCCCAGUaGCauaaCCGUG- -5'
24365 5' -52.8 NC_005264.1 + 102992 0.66 0.981883
Target:  5'- cGAACCGCGagugcguGGUCAugagcUCGc-UUGGUGCg -3'
miRNA:   3'- aCUUGGCGC-------CCAGU-----AGCauAACCGUG- -5'
24365 5' -52.8 NC_005264.1 + 3611 0.66 0.977636
Target:  5'- --cGCCGCGGGgggCcgCGagggcgGGCGCg -3'
miRNA:   3'- acuUGGCGCCCa--GuaGCauaa--CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 122638 0.66 0.977636
Target:  5'- --cGCCGCGGGgggCcgCGagggcgGGCGCg -3'
miRNA:   3'- acuUGGCGCCCa--GuaGCauaa--CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 113090 0.66 0.975126
Target:  5'- -uAGCCGCGGGguugUGUGUcaUGGUGCu -3'
miRNA:   3'- acUUGGCGCCCaguaGCAUA--ACCGUG- -5'
24365 5' -52.8 NC_005264.1 + 51939 0.66 0.974601
Target:  5'- cGAGCUugGCGaGGgugccgcuaacgCGUCGUGUcGGCGCg -3'
miRNA:   3'- aCUUGG--CGC-CCa-----------GUAGCAUAaCCGUG- -5'
24365 5' -52.8 NC_005264.1 + 98408 0.66 0.972417
Target:  5'- aGAGCCGCGGcagacGUCAUCGccGUgcccgcGGCGu -3'
miRNA:   3'- aCUUGGCGCC-----CAGUAGCa-UAa-----CCGUg -5'
24365 5' -52.8 NC_005264.1 + 64264 0.66 0.972417
Target:  5'- gGGGCUGCGGGcgccguUCAUCuugc-GGCGCa -3'
miRNA:   3'- aCUUGGCGCCC------AGUAGcauaaCCGUG- -5'
24365 5' -52.8 NC_005264.1 + 83409 0.66 0.971851
Target:  5'- cGcGCCGCGGGUCGuugagaaUCGUcaucccaugggcgAUuagcaUGGCGCc -3'
miRNA:   3'- aCuUGGCGCCCAGU-------AGCA-------------UA-----ACCGUG- -5'
24365 5' -52.8 NC_005264.1 + 151351 0.67 0.969501
Target:  5'- aGGGCCGCGcGGcCuUCGUuaugGGCAg -3'
miRNA:   3'- aCUUGGCGC-CCaGuAGCAuaa-CCGUg -5'
24365 5' -52.8 NC_005264.1 + 18965 0.67 0.966372
Target:  5'- aUGGGCCGCGGaaacgAUCGcccgGGCACa -3'
miRNA:   3'- -ACUUGGCGCCcag--UAGCauaaCCGUG- -5'
24365 5' -52.8 NC_005264.1 + 123302 0.67 0.966372
Target:  5'- gGAACCGCGGGg---CGgc--GGCAg -3'
miRNA:   3'- aCUUGGCGCCCaguaGCauaaCCGUg -5'
24365 5' -52.8 NC_005264.1 + 4275 0.67 0.966372
Target:  5'- gGAACCGCGGGg---CGgc--GGCAg -3'
miRNA:   3'- aCUUGGCGCCCaguaGCauaaCCGUg -5'
24365 5' -52.8 NC_005264.1 + 44935 0.67 0.963023
Target:  5'- cGAACCGCGGGcC--CGU--UGcGCGCg -3'
miRNA:   3'- aCUUGGCGCCCaGuaGCAuaAC-CGUG- -5'
24365 5' -52.8 NC_005264.1 + 162665 0.68 0.947321
Target:  5'- cGcGCCgGCGGGUCGUagGUGUacggucGGCGCg -3'
miRNA:   3'- aCuUGG-CGCCCAGUAg-CAUAa-----CCGUG- -5'
24365 5' -52.8 NC_005264.1 + 101355 0.68 0.947321
Target:  5'- -aGACCGCGGGgcgCGUCGgc---GCGCu -3'
miRNA:   3'- acUUGGCGCCCa--GUAGCauaacCGUG- -5'
24365 5' -52.8 NC_005264.1 + 93863 0.68 0.942798
Target:  5'- --uGCgGCGGGUaGUCGUGccgUGGCAg -3'
miRNA:   3'- acuUGgCGCCCAgUAGCAUa--ACCGUg -5'
24365 5' -52.8 NC_005264.1 + 96307 0.68 0.942798
Target:  5'- cGAcgcCCGCaacgcGGUCGUCGUcagGGCACg -3'
miRNA:   3'- aCUu--GGCGc----CCAGUAGCAuaaCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.