miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 3' -54.6 NC_005264.1 + 130111 1.08 0.005201
Target:  5'- aCGACACCAGGGCACCGUAAAAGCGGUu -3'
miRNA:   3'- -GCUGUGGUCCCGUGGCAUUUUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 154585 0.76 0.481815
Target:  5'- gGACACCAGGGCGCCGcu--GGCc-- -3'
miRNA:   3'- gCUGUGGUCCCGUGGCauuuUCGcca -5'
24368 3' -54.6 NC_005264.1 + 91415 0.75 0.530487
Target:  5'- -aGCGCCGGGGCACCGgcGGAGUc-- -3'
miRNA:   3'- gcUGUGGUCCCGUGGCauUUUCGcca -5'
24368 3' -54.6 NC_005264.1 + 7064 0.75 0.540444
Target:  5'- aCGGCGCCGGccGGCGCCGUcgcgcuGCGGg -3'
miRNA:   3'- -GCUGUGGUC--CCGUGGCAuuuu--CGCCa -5'
24368 3' -54.6 NC_005264.1 + 126091 0.75 0.540444
Target:  5'- aCGGCGCCGGccGGCGCCGUcgcgcuGCGGg -3'
miRNA:   3'- -GCUGUGGUC--CCGUGGCAuuuu--CGCCa -5'
24368 3' -54.6 NC_005264.1 + 144138 0.75 0.540444
Target:  5'- -cAUACgGGGGCACCGUAAGAGUGc- -3'
miRNA:   3'- gcUGUGgUCCCGUGGCAUUUUCGCca -5'
24368 3' -54.6 NC_005264.1 + 93269 0.75 0.550464
Target:  5'- uGGCGCCAGGGCcCCGgcuucAGUGGa -3'
miRNA:   3'- gCUGUGGUCCCGuGGCauuu-UCGCCa -5'
24368 3' -54.6 NC_005264.1 + 107184 0.74 0.570666
Target:  5'- gGAUACCGGGGcCGCCaaaacUAAAGGCGGc -3'
miRNA:   3'- gCUGUGGUCCC-GUGGc----AUUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 121705 0.74 0.570666
Target:  5'- cCGAcCGCgAGGGCAgCGUGGuGGCGGa -3'
miRNA:   3'- -GCU-GUGgUCCCGUgGCAUUuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 2678 0.74 0.570666
Target:  5'- cCGAcCGCgAGGGCAgCGUGGuGGCGGa -3'
miRNA:   3'- -GCU-GUGgUCCCGUgGCAUUuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 41060 0.73 0.661896
Target:  5'- aCGGCGCCGGGggacGCGCCGUuaaaccuAGAAGaCGGg -3'
miRNA:   3'- -GCUGUGGUCC----CGUGGCA-------UUUUC-GCCa -5'
24368 3' -54.6 NC_005264.1 + 160087 0.73 0.661896
Target:  5'- aCGGCGCCGGGggacGCGCCGUuaaaccuAGAAGaCGGg -3'
miRNA:   3'- -GCUGUGGUCC----CGUGGCA-------UUUUC-GCCa -5'
24368 3' -54.6 NC_005264.1 + 159386 0.73 0.662921
Target:  5'- gCGGCACC-GGGCGCCacgGGcGGCGGa -3'
miRNA:   3'- -GCUGUGGuCCCGUGGca-UUuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 132590 0.71 0.723639
Target:  5'- gCGGCGCgGGcGGgACCGgggAAGGGCGGa -3'
miRNA:   3'- -GCUGUGgUC-CCgUGGCa--UUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 151753 0.71 0.723639
Target:  5'- uCGACGCCGcaGCAUCGUAauuacGAGGCGGg -3'
miRNA:   3'- -GCUGUGGUccCGUGGCAU-----UUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 20634 0.71 0.723639
Target:  5'- gGGCACU-GGGCgACCGUu--GGCGGUc -3'
miRNA:   3'- gCUGUGGuCCCG-UGGCAuuuUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 13563 0.71 0.723639
Target:  5'- gCGGCGCgGGcGGgACCGgggAAGGGCGGa -3'
miRNA:   3'- -GCUGUGgUC-CCgUGGCa--UUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 25222 0.7 0.790715
Target:  5'- gGugGCCAGGGCaguGCCGgcagaguuGAGGCGaGUu -3'
miRNA:   3'- gCugUGGUCCCG---UGGCau------UUUCGC-CA- -5'
24368 3' -54.6 NC_005264.1 + 84320 0.7 0.808718
Target:  5'- aGACGCCAGcGGCG-CGUAcccAgcGCGGUg -3'
miRNA:   3'- gCUGUGGUC-CCGUgGCAU---UuuCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 154814 0.7 0.817482
Target:  5'- gGGCGCgGuGGCGCCGUcguGGCGGg -3'
miRNA:   3'- gCUGUGgUcCCGUGGCAuuuUCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.