Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24368 | 3' | -54.6 | NC_005264.1 | + | 14396 | 0.67 | 0.932144 |
Target: 5'- gGGCGCCGGcuguucugaccaccaGGCauuGCCGUGAGAGCa-- -3' miRNA: 3'- gCUGUGGUC---------------CCG---UGGCAUUUUCGcca -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 121903 | 0.69 | 0.842719 |
Target: 5'- gCGAUcgACCGGGGCGCgGcgc-GGCGGg -3' miRNA: 3'- -GCUG--UGGUCCCGUGgCauuuUCGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 154963 | 0.69 | 0.847564 |
Target: 5'- cCGACGCCgcaucuGGGGCGCCGacgccgcccccacAAucuAGCGGUa -3' miRNA: 3'- -GCUGUGG------UCCCGUGGCa------------UUu--UCGCCA- -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 124310 | 0.69 | 0.850755 |
Target: 5'- gGACGgCGGGGCGgcggcugacCCGU-GGGGCGGg -3' miRNA: 3'- gCUGUgGUCCCGU---------GGCAuUUUCGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 1670 | 0.69 | 0.858591 |
Target: 5'- gCGACGgUGGGGCAaaGUAuuGGGGCGGc -3' miRNA: 3'- -GCUGUgGUCCCGUggCAU--UUUCGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 37136 | 0.68 | 0.887809 |
Target: 5'- gGGCACCA-GGCGCCG-----GCGGUc -3' miRNA: 3'- gCUGUGGUcCCGUGGCauuuuCGCCA- -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 138318 | 0.68 | 0.894557 |
Target: 5'- uGGCucacucuaGCCAGGGCAaCGgGAAAGUGGa -3' miRNA: 3'- gCUG--------UGGUCCCGUgGCaUUUUCGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 55169 | 0.68 | 0.901072 |
Target: 5'- gCGGCcUCuGGGCGCgGcUGAAGGCGGc -3' miRNA: 3'- -GCUGuGGuCCCGUGgC-AUUUUCGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 147476 | 0.67 | 0.907353 |
Target: 5'- gCGGCACCGGGGCua-GUGu--GUGGc -3' miRNA: 3'- -GCUGUGGUCCCGuggCAUuuuCGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 122622 | 0.69 | 0.837804 |
Target: 5'- aGGCGCgaagaauuaccgccgCGGGGgGCCGcGAGGGCGGg -3' miRNA: 3'- gCUGUG---------------GUCCCgUGGCaUUUUCGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 157867 | 0.69 | 0.83449 |
Target: 5'- aCGAUGCgC-GGGCACCGUGccGAGuCGGUg -3' miRNA: 3'- -GCUGUG-GuCCCGUGGCAUu-UUC-GCCA- -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 91303 | 0.69 | 0.83449 |
Target: 5'- uGuCACCAGGGCGaugcCCGUAccgGAGGCGc- -3' miRNA: 3'- gCuGUGGUCCCGU----GGCAU---UUUCGCca -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 126091 | 0.75 | 0.540444 |
Target: 5'- aCGGCGCCGGccGGCGCCGUcgcgcuGCGGg -3' miRNA: 3'- -GCUGUGGUC--CCGUGGCAuuuu--CGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 93269 | 0.75 | 0.550464 |
Target: 5'- uGGCGCCAGGGCcCCGgcuucAGUGGa -3' miRNA: 3'- gCUGUGGUCCCGuGGCauuu-UCGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 107184 | 0.74 | 0.570666 |
Target: 5'- gGAUACCGGGGcCGCCaaaacUAAAGGCGGc -3' miRNA: 3'- gCUGUGGUCCC-GUGGc----AUUUUCGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 121705 | 0.74 | 0.570666 |
Target: 5'- cCGAcCGCgAGGGCAgCGUGGuGGCGGa -3' miRNA: 3'- -GCU-GUGgUCCCGUgGCAUUuUCGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 160087 | 0.73 | 0.661896 |
Target: 5'- aCGGCGCCGGGggacGCGCCGUuaaaccuAGAAGaCGGg -3' miRNA: 3'- -GCUGUGGUCC----CGUGGCA-------UUUUC-GCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 132590 | 0.71 | 0.723639 |
Target: 5'- gCGGCGCgGGcGGgACCGgggAAGGGCGGa -3' miRNA: 3'- -GCUGUGgUC-CCgUGGCa--UUUUCGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 154814 | 0.7 | 0.817482 |
Target: 5'- gGGCGCgGuGGCGCCGUcguGGCGGg -3' miRNA: 3'- gCUGUGgUcCCGUGGCAuuuUCGCCa -5' |
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24368 | 3' | -54.6 | NC_005264.1 | + | 22051 | 0.69 | 0.826075 |
Target: 5'- cCGACGCCuuGGacgguaGCGCCGccgccgGAAGGCGGUu -3' miRNA: 3'- -GCUGUGGu-CC------CGUGGCa-----UUUUCGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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