miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 3' -54.6 NC_005264.1 + 1670 0.69 0.858591
Target:  5'- gCGACGgUGGGGCAaaGUAuuGGGGCGGc -3'
miRNA:   3'- -GCUGUgGUCCCGUggCAU--UUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 2678 0.74 0.570666
Target:  5'- cCGAcCGCgAGGGCAgCGUGGuGGCGGa -3'
miRNA:   3'- -GCU-GUGgUCCCGUgGCAUUuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 2756 0.66 0.953094
Target:  5'- aCGGCGcgucCCccGGCGCCGUAccgucuggGGAGUGGUc -3'
miRNA:   3'- -GCUGU----GGucCCGUGGCAU--------UUUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 2877 0.69 0.842719
Target:  5'- gCGAUcgACCGGGGCGCgGcgc-GGCGGg -3'
miRNA:   3'- -GCUG--UGGUCCCGUGgCauuuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 3595 0.69 0.837804
Target:  5'- aGGCGCgaagaauuaccgccgCGGGGgGCCGcGAGGGCGGg -3'
miRNA:   3'- gCUGUG---------------GUCCCgUGGCaUUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 3615 0.66 0.940002
Target:  5'- gGACGgU-GGGCGCUGUG--GGCGGg -3'
miRNA:   3'- gCUGUgGuCCCGUGGCAUuuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 5283 0.69 0.850755
Target:  5'- gGACGgCGGGGCGgcggcugacCCGU-GGGGCGGg -3'
miRNA:   3'- gCUGUgGUCCCGU---------GGCAuUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 7064 0.75 0.540444
Target:  5'- aCGGCGCCGGccGGCGCCGUcgcgcuGCGGg -3'
miRNA:   3'- -GCUGUGGUC--CCGUGGCAuuuu--CGCCa -5'
24368 3' -54.6 NC_005264.1 + 13563 0.71 0.723639
Target:  5'- gCGGCGCgGGcGGgACCGgggAAGGGCGGa -3'
miRNA:   3'- -GCUGUGgUC-CCgUGGCa--UUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 14396 0.67 0.932144
Target:  5'- gGGCGCCGGcuguucugaccaccaGGCauuGCCGUGAGAGCa-- -3'
miRNA:   3'- gCUGUGGUC---------------CCG---UGGCAUUUUCGcca -5'
24368 3' -54.6 NC_005264.1 + 20634 0.71 0.723639
Target:  5'- gGGCACU-GGGCgACCGUu--GGCGGUc -3'
miRNA:   3'- gCUGUGGuCCCG-UGGCAuuuUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 21501 0.67 0.930083
Target:  5'- uGugACguGGGCACCGccgucgcAGUGGg -3'
miRNA:   3'- gCugUGguCCCGUGGCauuu---UCGCCa -5'
24368 3' -54.6 NC_005264.1 + 22051 0.69 0.826075
Target:  5'- cCGACGCCuuGGacgguaGCGCCGccgccgGAAGGCGGUu -3'
miRNA:   3'- -GCUGUGGu-CC------CGUGGCa-----UUUUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 25222 0.7 0.790715
Target:  5'- gGugGCCAGGGCaguGCCGgcagaguuGAGGCGaGUu -3'
miRNA:   3'- gCugUGGUCCCG---UGGCau------UUUCGC-CA- -5'
24368 3' -54.6 NC_005264.1 + 26373 0.66 0.956991
Target:  5'- aGGCugCGcGGCGCCGUcucuGAgcGCGGc -3'
miRNA:   3'- gCUGugGUcCCGUGGCA----UUuuCGCCa -5'
24368 3' -54.6 NC_005264.1 + 35788 0.7 0.817482
Target:  5'- gGGCGCgGuGGCGCCGUcguGGCGGg -3'
miRNA:   3'- gCUGUGgUcCCGUGGCAuuuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 35936 0.69 0.847564
Target:  5'- cCGACGCCgcaucuGGGGCGCCGacgccgcccccacAAucuAGCGGUa -3'
miRNA:   3'- -GCUGUGG------UCCCGUGGCa------------UUu--UCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 37136 0.68 0.887809
Target:  5'- gGGCACCA-GGCGCCG-----GCGGUc -3'
miRNA:   3'- gCUGUGGUcCCGUGGCauuuuCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 38356 0.66 0.944153
Target:  5'- gGGCGgCGGGGCGguuaggaccuccuCCGgcGAGAGCGGc -3'
miRNA:   3'- gCUGUgGUCCCGU-------------GGCa-UUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 38841 0.69 0.83449
Target:  5'- aCGAUGCgC-GGGCACCGUGccGAGuCGGUg -3'
miRNA:   3'- -GCUGUG-GuCCCGUGGCAUu-UUC-GCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.