miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 3' -54.6 NC_005264.1 + 160087 0.73 0.661896
Target:  5'- aCGGCGCCGGGggacGCGCCGUuaaaccuAGAAGaCGGg -3'
miRNA:   3'- -GCUGUGGUCC----CGUGGCA-------UUUUC-GCCa -5'
24368 3' -54.6 NC_005264.1 + 159386 0.73 0.662921
Target:  5'- gCGGCACC-GGGCGCCacgGGcGGCGGa -3'
miRNA:   3'- -GCUGUGGuCCCGUGGca-UUuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 157867 0.69 0.83449
Target:  5'- aCGAUGCgC-GGGCACCGUGccGAGuCGGUg -3'
miRNA:   3'- -GCUGUG-GuCCCGUGGCAUu-UUC-GCCA- -5'
24368 3' -54.6 NC_005264.1 + 157429 0.69 0.83449
Target:  5'- uCGuuAUCGGGGCGCUgaaGUAcGAGCGGg -3'
miRNA:   3'- -GCugUGGUCCCGUGG---CAUuUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 157383 0.66 0.944153
Target:  5'- gGGCGgCGGGGCGguuaggaccuccuCCGgcGAGAGCGGc -3'
miRNA:   3'- gCUGUgGUCCCGU-------------GGCa-UUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 155450 0.67 0.907353
Target:  5'- aCGGCGCCGGGGCcgcgAUCGaAGAaaugaaaaccgcGGCGGc -3'
miRNA:   3'- -GCUGUGGUCCCG----UGGCaUUU------------UCGCCa -5'
24368 3' -54.6 NC_005264.1 + 154963 0.69 0.847564
Target:  5'- cCGACGCCgcaucuGGGGCGCCGacgccgcccccacAAucuAGCGGUa -3'
miRNA:   3'- -GCUGUGG------UCCCGUGGCa------------UUu--UCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 154814 0.7 0.817482
Target:  5'- gGGCGCgGuGGCGCCGUcguGGCGGg -3'
miRNA:   3'- gCUGUGgUcCCGUGGCAuuuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 154585 0.76 0.481815
Target:  5'- gGACACCAGGGCGCCGcu--GGCc-- -3'
miRNA:   3'- gCUGUGGUCCCGUGGCauuuUCGcca -5'
24368 3' -54.6 NC_005264.1 + 151753 0.71 0.723639
Target:  5'- uCGACGCCGcaGCAUCGUAauuacGAGGCGGg -3'
miRNA:   3'- -GCUGUGGUccCGUGGCAU-----UUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 147476 0.67 0.907353
Target:  5'- gCGGCACCGGGGCua-GUGu--GUGGc -3'
miRNA:   3'- -GCUGUGGUCCCGuggCAUuuuCGCCa -5'
24368 3' -54.6 NC_005264.1 + 144520 0.66 0.948965
Target:  5'- uCGugGgCAGaGGCaACUGgcAGGGCGGg -3'
miRNA:   3'- -GCugUgGUC-CCG-UGGCauUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 144138 0.75 0.540444
Target:  5'- -cAUACgGGGGCACCGUAAGAGUGc- -3'
miRNA:   3'- gcUGUGgUCCCGUGGCAUUUUCGCca -5'
24368 3' -54.6 NC_005264.1 + 138318 0.68 0.894557
Target:  5'- uGGCucacucuaGCCAGGGCAaCGgGAAAGUGGa -3'
miRNA:   3'- gCUG--------UGGUCCCGUgGCaUUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 132590 0.71 0.723639
Target:  5'- gCGGCGCgGGcGGgACCGgggAAGGGCGGa -3'
miRNA:   3'- -GCUGUGgUC-CCgUGGCa--UUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 131579 0.66 0.948965
Target:  5'- gCGGCACCu-GGCGCCuagGUGuggagGGAGCGGc -3'
miRNA:   3'- -GCUGUGGucCCGUGG---CAU-----UUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 130111 1.08 0.005201
Target:  5'- aCGACACCAGGGCACCGUAAAAGCGGUu -3'
miRNA:   3'- -GCUGUGGUCCCGUGGCAUUUUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 128680 0.69 0.858591
Target:  5'- uGACugCAGGGCGCgGUAccacgacccGAAGCc-- -3'
miRNA:   3'- gCUGugGUCCCGUGgCAU---------UUUCGcca -5'
24368 3' -54.6 NC_005264.1 + 126091 0.75 0.540444
Target:  5'- aCGGCGCCGGccGGCGCCGUcgcgcuGCGGg -3'
miRNA:   3'- -GCUGUGGUC--CCGUGGCAuuuu--CGCCa -5'
24368 3' -54.6 NC_005264.1 + 124310 0.69 0.850755
Target:  5'- gGACGgCGGGGCGgcggcugacCCGU-GGGGCGGg -3'
miRNA:   3'- gCUGUgGUCCCGU---------GGCAuUUUCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.