miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 3' -54.6 NC_005264.1 + 41060 0.73 0.661896
Target:  5'- aCGGCGCCGGGggacGCGCCGUuaaaccuAGAAGaCGGg -3'
miRNA:   3'- -GCUGUGGUCC----CGUGGCA-------UUUUC-GCCa -5'
24368 3' -54.6 NC_005264.1 + 45771 0.69 0.842719
Target:  5'- aGACAgCGauGGGCGCCG---GAGCGGc -3'
miRNA:   3'- gCUGUgGU--CCCGUGGCauuUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 48063 0.66 0.940002
Target:  5'- ---gGCCAGGGaCAUCGgccGAGCGGc -3'
miRNA:   3'- gcugUGGUCCC-GUGGCauuUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 49848 0.67 0.913396
Target:  5'- aCGGCACCGGGGCccuggugacGCCGcgc-AGCGu- -3'
miRNA:   3'- -GCUGUGGUCCCG---------UGGCauuuUCGCca -5'
24368 3' -54.6 NC_005264.1 + 53112 0.66 0.948965
Target:  5'- aGGCGCUcggcgAGGGgGCCGaGGAGGcCGGg -3'
miRNA:   3'- gCUGUGG-----UCCCgUGGCaUUUUC-GCCa -5'
24368 3' -54.6 NC_005264.1 + 55169 0.68 0.901072
Target:  5'- gCGGCcUCuGGGCGCgGcUGAAGGCGGc -3'
miRNA:   3'- -GCUGuGGuCCCGUGgC-AUUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 64265 0.68 0.880835
Target:  5'- gGGCugC-GGGCGCCGUucaucuuGCGGc -3'
miRNA:   3'- gCUGugGuCCCGUGGCAuuuu---CGCCa -5'
24368 3' -54.6 NC_005264.1 + 65531 0.68 0.887809
Target:  5'- uGGCACCGGGGCGCCcucUAGuuGCc-- -3'
miRNA:   3'- gCUGUGGUCCCGUGGc--AUUuuCGcca -5'
24368 3' -54.6 NC_005264.1 + 72891 0.68 0.880835
Target:  5'- -cGCGCCAGcGGcCGCCGau-GGGCGGa -3'
miRNA:   3'- gcUGUGGUC-CC-GUGGCauuUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 76243 0.66 0.953094
Target:  5'- -aGCGCUuGGGUguggaGCCGUGAcuGCGGUc -3'
miRNA:   3'- gcUGUGGuCCCG-----UGGCAUUuuCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 77974 0.66 0.953094
Target:  5'- cCGGCGCCGcGcGUACCG---GAGCGGg -3'
miRNA:   3'- -GCUGUGGUcC-CGUGGCauuUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 80042 0.66 0.944602
Target:  5'- --cCGCUAGGGCauguGCCGU---AGCGGa -3'
miRNA:   3'- gcuGUGGUCCCG----UGGCAuuuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 84196 0.69 0.858591
Target:  5'- aCGAgGCaCAGGGcCGCCGc---GGCGGUu -3'
miRNA:   3'- -GCUgUG-GUCCC-GUGGCauuuUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 84320 0.7 0.808718
Target:  5'- aGACGCCAGcGGCG-CGUAcccAgcGCGGUg -3'
miRNA:   3'- gCUGUGGUC-CCGUgGCAU---UuuCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 91303 0.69 0.83449
Target:  5'- uGuCACCAGGGCGaugcCCGUAccgGAGGCGc- -3'
miRNA:   3'- gCuGUGGUCCCGU----GGCAU---UUUCGCca -5'
24368 3' -54.6 NC_005264.1 + 91415 0.75 0.530487
Target:  5'- -aGCGCCGGGGCACCGgcGGAGUc-- -3'
miRNA:   3'- gcUGUGGUCCCGUGGCauUUUCGcca -5'
24368 3' -54.6 NC_005264.1 + 92912 0.66 0.940002
Target:  5'- aCGGgaGCCGGGGgAUCGUGAGcaaggagugucGGCGGc -3'
miRNA:   3'- -GCUg-UGGUCCCgUGGCAUUU-----------UCGCCa -5'
24368 3' -54.6 NC_005264.1 + 93160 0.67 0.907353
Target:  5'- aGuCACCgucGGGGCGCCGcuccagacuGGGCGGa -3'
miRNA:   3'- gCuGUGG---UCCCGUGGCauu------UUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 93269 0.75 0.550464
Target:  5'- uGGCGCCAGGGCcCCGgcuucAGUGGa -3'
miRNA:   3'- gCUGUGGUCCCGuGGCauuu-UCGCCa -5'
24368 3' -54.6 NC_005264.1 + 95332 0.68 0.880835
Target:  5'- cCGcCGCC-GGGCGCCGcGAAacggacucGGCGGg -3'
miRNA:   3'- -GCuGUGGuCCCGUGGCaUUU--------UCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.