miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 3' -54.6 NC_005264.1 + 121705 0.74 0.570666
Target:  5'- cCGAcCGCgAGGGCAgCGUGGuGGCGGa -3'
miRNA:   3'- -GCU-GUGgUCCCGUgGCAUUuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 160087 0.73 0.661896
Target:  5'- aCGGCGCCGGGggacGCGCCGUuaaaccuAGAAGaCGGg -3'
miRNA:   3'- -GCUGUGGUCC----CGUGGCA-------UUUUC-GCCa -5'
24368 3' -54.6 NC_005264.1 + 132590 0.71 0.723639
Target:  5'- gCGGCGCgGGcGGgACCGgggAAGGGCGGa -3'
miRNA:   3'- -GCUGUGgUC-CCgUGGCa--UUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 154814 0.7 0.817482
Target:  5'- gGGCGCgGuGGCGCCGUcguGGCGGg -3'
miRNA:   3'- gCUGUGgUcCCGUGGCAuuuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 121903 0.69 0.842719
Target:  5'- gCGAUcgACCGGGGCGCgGcgc-GGCGGg -3'
miRNA:   3'- -GCUG--UGGUCCCGUGgCauuuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 122622 0.69 0.837804
Target:  5'- aGGCGCgaagaauuaccgccgCGGGGgGCCGcGAGGGCGGg -3'
miRNA:   3'- gCUGUG---------------GUCCCgUGGCaUUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 157867 0.69 0.83449
Target:  5'- aCGAUGCgC-GGGCACCGUGccGAGuCGGUg -3'
miRNA:   3'- -GCUGUG-GuCCCGUGGCAUu-UUC-GCCA- -5'
24368 3' -54.6 NC_005264.1 + 91303 0.69 0.83449
Target:  5'- uGuCACCAGGGCGaugcCCGUAccgGAGGCGc- -3'
miRNA:   3'- gCuGUGGUCCCGU----GGCAU---UUUCGCca -5'
24368 3' -54.6 NC_005264.1 + 22051 0.69 0.826075
Target:  5'- cCGACGCCuuGGacgguaGCGCCGccgccgGAAGGCGGUu -3'
miRNA:   3'- -GCUGUGGu-CC------CGUGGCa-----UUUUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 21501 0.67 0.930083
Target:  5'- uGugACguGGGCACCGccgucgcAGUGGg -3'
miRNA:   3'- gCugUGguCCCGUGGCauuu---UCGCCa -5'
24368 3' -54.6 NC_005264.1 + 101583 0.67 0.930083
Target:  5'- gGuACGCCgAGGcGCGCCGUGAgcugGAGCGc- -3'
miRNA:   3'- gC-UGUGG-UCC-CGUGGCAUU----UUCGCca -5'
24368 3' -54.6 NC_005264.1 + 121795 0.67 0.934666
Target:  5'- aCGGCGCCcaauacguuaggaGGGGCA-CGUGGAaggcacAGCGGc -3'
miRNA:   3'- -GCUGUGG-------------UCCCGUgGCAUUU------UCGCCa -5'
24368 3' -54.6 NC_005264.1 + 108140 0.66 0.940002
Target:  5'- cCGGgAUCGGGGgGCCGUcGAGccucGCGGg -3'
miRNA:   3'- -GCUgUGGUCCCgUGGCAuUUU----CGCCa -5'
24368 3' -54.6 NC_005264.1 + 38356 0.66 0.944153
Target:  5'- gGGCGgCGGGGCGguuaggaccuccuCCGgcGAGAGCGGc -3'
miRNA:   3'- gCUGUgGUCCCGU-------------GGCa-UUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 53112 0.66 0.948965
Target:  5'- aGGCGCUcggcgAGGGgGCCGaGGAGGcCGGg -3'
miRNA:   3'- gCUGUGG-----UCCCgUGGCaUUUUC-GCCa -5'
24368 3' -54.6 NC_005264.1 + 131579 0.66 0.948965
Target:  5'- gCGGCACCu-GGCGCCuagGUGuggagGGAGCGGc -3'
miRNA:   3'- -GCUGUGGucCCGUGG---CAU-----UUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 144520 0.66 0.948965
Target:  5'- uCGugGgCAGaGGCaACUGgcAGGGCGGg -3'
miRNA:   3'- -GCugUgGUC-CCG-UGGCauUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 76243 0.66 0.953094
Target:  5'- -aGCGCUuGGGUguggaGCCGUGAcuGCGGUc -3'
miRNA:   3'- gcUGUGGuCCCG-----UGGCAUUuuCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 2756 0.66 0.953094
Target:  5'- aCGGCGcgucCCccGGCGCCGUAccgucuggGGAGUGGUc -3'
miRNA:   3'- -GCUGU----GGucCCGUGGCAU--------UUUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 130111 1.08 0.005201
Target:  5'- aCGACACCAGGGCACCGUAAAAGCGGUu -3'
miRNA:   3'- -GCUGUGGUCCCGUGGCAUUUUCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.