miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 3' -54.6 NC_005264.1 + 154814 0.7 0.817482
Target:  5'- gGGCGCgGuGGCGCCGUcguGGCGGg -3'
miRNA:   3'- gCUGUGgUcCCGUGGCAuuuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 22051 0.69 0.826075
Target:  5'- cCGACGCCuuGGacgguaGCGCCGccgccgGAAGGCGGUu -3'
miRNA:   3'- -GCUGUGGu-CC------CGUGGCa-----UUUUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 101387 0.69 0.83449
Target:  5'- aCGGCGCUcgAGcaacucGGCGCCG-AGGAGCGGg -3'
miRNA:   3'- -GCUGUGG--UC------CCGUGGCaUUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 38841 0.69 0.83449
Target:  5'- aCGAUGCgC-GGGCACCGUGccGAGuCGGUg -3'
miRNA:   3'- -GCUGUG-GuCCCGUGGCAUu-UUC-GCCA- -5'
24368 3' -54.6 NC_005264.1 + 91303 0.69 0.83449
Target:  5'- uGuCACCAGGGCGaugcCCGUAccgGAGGCGc- -3'
miRNA:   3'- gCuGUGGUCCCGU----GGCAU---UUUCGCca -5'
24368 3' -54.6 NC_005264.1 + 157867 0.69 0.83449
Target:  5'- aCGAUGCgC-GGGCACCGUGccGAGuCGGUg -3'
miRNA:   3'- -GCUGUG-GuCCCGUGGCAUu-UUC-GCCA- -5'
24368 3' -54.6 NC_005264.1 + 157429 0.69 0.83449
Target:  5'- uCGuuAUCGGGGCGCUgaaGUAcGAGCGGg -3'
miRNA:   3'- -GCugUGGUCCCGUGG---CAUuUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 122622 0.69 0.837804
Target:  5'- aGGCGCgaagaauuaccgccgCGGGGgGCCGcGAGGGCGGg -3'
miRNA:   3'- gCUGUG---------------GUCCCgUGGCaUUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 3595 0.69 0.837804
Target:  5'- aGGCGCgaagaauuaccgccgCGGGGgGCCGcGAGGGCGGg -3'
miRNA:   3'- gCUGUG---------------GUCCCgUGGCaUUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 45771 0.69 0.842719
Target:  5'- aGACAgCGauGGGCGCCG---GAGCGGc -3'
miRNA:   3'- gCUGUgGU--CCCGUGGCauuUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 121903 0.69 0.842719
Target:  5'- gCGAUcgACCGGGGCGCgGcgc-GGCGGg -3'
miRNA:   3'- -GCUG--UGGUCCCGUGgCauuuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 2877 0.69 0.842719
Target:  5'- gCGAUcgACCGGGGCGCgGcgc-GGCGGg -3'
miRNA:   3'- -GCUG--UGGUCCCGUGgCauuuUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 35936 0.69 0.847564
Target:  5'- cCGACGCCgcaucuGGGGCGCCGacgccgcccccacAAucuAGCGGUa -3'
miRNA:   3'- -GCUGUGG------UCCCGUGGCa------------UUu--UCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 154963 0.69 0.847564
Target:  5'- cCGACGCCgcaucuGGGGCGCCGacgccgcccccacAAucuAGCGGUa -3'
miRNA:   3'- -GCUGUGG------UCCCGUGGCa------------UUu--UCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 124310 0.69 0.850755
Target:  5'- gGACGgCGGGGCGgcggcugacCCGU-GGGGCGGg -3'
miRNA:   3'- gCUGUgGUCCCGU---------GGCAuUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 5283 0.69 0.850755
Target:  5'- gGACGgCGGGGCGgcggcugacCCGU-GGGGCGGg -3'
miRNA:   3'- gCUGUgGUCCCGU---------GGCAuUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 1670 0.69 0.858591
Target:  5'- gCGACGgUGGGGCAaaGUAuuGGGGCGGc -3'
miRNA:   3'- -GCUGUgGUCCCGUggCAU--UUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 128680 0.69 0.858591
Target:  5'- uGACugCAGGGCGCgGUAccacgacccGAAGCc-- -3'
miRNA:   3'- gCUGugGUCCCGUGgCAU---------UUUCGcca -5'
24368 3' -54.6 NC_005264.1 + 84196 0.69 0.858591
Target:  5'- aCGAgGCaCAGGGcCGCCGc---GGCGGUu -3'
miRNA:   3'- -GCUgUG-GUCCC-GUGGCauuuUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 100482 0.68 0.880835
Target:  5'- gCGGCgGCCAGGGCcCUGgaggGGuuGCGGg -3'
miRNA:   3'- -GCUG-UGGUCCCGuGGCa---UUuuCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.