miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 3' -54.6 NC_005264.1 + 49848 0.67 0.913396
Target:  5'- aCGGCACCGGGGCccuggugacGCCGcgc-AGCGu- -3'
miRNA:   3'- -GCUGUGGUCCCG---------UGGCauuuUCGCca -5'
24368 3' -54.6 NC_005264.1 + 147476 0.67 0.907353
Target:  5'- gCGGCACCGGGGCua-GUGu--GUGGc -3'
miRNA:   3'- -GCUGUGGUCCCGuggCAUuuuCGCCa -5'
24368 3' -54.6 NC_005264.1 + 155450 0.67 0.907353
Target:  5'- aCGGCGCCGGGGCcgcgAUCGaAGAaaugaaaaccgcGGCGGc -3'
miRNA:   3'- -GCUGUGGUCCCG----UGGCaUUU------------UCGCCa -5'
24368 3' -54.6 NC_005264.1 + 104394 0.67 0.907353
Target:  5'- uCGACGCCAaGGaCAUCG--AAGGCGGa -3'
miRNA:   3'- -GCUGUGGUcCC-GUGGCauUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 93160 0.67 0.907353
Target:  5'- aGuCACCgucGGGGCGCCGcuccagacuGGGCGGa -3'
miRNA:   3'- gCuGUGG---UCCCGUGGCauu------UUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 55169 0.68 0.901072
Target:  5'- gCGGCcUCuGGGCGCgGcUGAAGGCGGc -3'
miRNA:   3'- -GCUGuGGuCCCGUGgC-AUUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 138318 0.68 0.894557
Target:  5'- uGGCucacucuaGCCAGGGCAaCGgGAAAGUGGa -3'
miRNA:   3'- gCUG--------UGGUCCCGUgGCaUUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 65531 0.68 0.887809
Target:  5'- uGGCACCGGGGCGCCcucUAGuuGCc-- -3'
miRNA:   3'- gCUGUGGUCCCGUGGc--AUUuuCGcca -5'
24368 3' -54.6 NC_005264.1 + 37136 0.68 0.887809
Target:  5'- gGGCACCA-GGCGCCG-----GCGGUc -3'
miRNA:   3'- gCUGUGGUcCCGUGGCauuuuCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 72891 0.68 0.880835
Target:  5'- -cGCGCCAGcGGcCGCCGau-GGGCGGa -3'
miRNA:   3'- gcUGUGGUC-CC-GUGGCauuUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 100482 0.68 0.880835
Target:  5'- gCGGCgGCCAGGGCcCUGgaggGGuuGCGGg -3'
miRNA:   3'- -GCUG-UGGUCCCGuGGCa---UUuuCGCCa -5'
24368 3' -54.6 NC_005264.1 + 64265 0.68 0.880835
Target:  5'- gGGCugC-GGGCGCCGUucaucuuGCGGc -3'
miRNA:   3'- gCUGugGuCCCGUGGCAuuuu---CGCCa -5'
24368 3' -54.6 NC_005264.1 + 95332 0.68 0.880835
Target:  5'- cCGcCGCC-GGGCGCCGcGAAacggacucGGCGGg -3'
miRNA:   3'- -GCuGUGGuCCCGUGGCaUUU--------UCGCCa -5'
24368 3' -54.6 NC_005264.1 + 84196 0.69 0.858591
Target:  5'- aCGAgGCaCAGGGcCGCCGc---GGCGGUu -3'
miRNA:   3'- -GCUgUG-GUCCC-GUGGCauuuUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 1670 0.69 0.858591
Target:  5'- gCGACGgUGGGGCAaaGUAuuGGGGCGGc -3'
miRNA:   3'- -GCUGUgGUCCCGUggCAU--UUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 128680 0.69 0.858591
Target:  5'- uGACugCAGGGCGCgGUAccacgacccGAAGCc-- -3'
miRNA:   3'- gCUGugGUCCCGUGgCAU---------UUUCGcca -5'
24368 3' -54.6 NC_005264.1 + 124310 0.69 0.850755
Target:  5'- gGACGgCGGGGCGgcggcugacCCGU-GGGGCGGg -3'
miRNA:   3'- gCUGUgGUCCCGU---------GGCAuUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 5283 0.69 0.850755
Target:  5'- gGACGgCGGGGCGgcggcugacCCGU-GGGGCGGg -3'
miRNA:   3'- gCUGUgGUCCCGU---------GGCAuUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 154963 0.69 0.847564
Target:  5'- cCGACGCCgcaucuGGGGCGCCGacgccgcccccacAAucuAGCGGUa -3'
miRNA:   3'- -GCUGUGG------UCCCGUGGCa------------UUu--UCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 35936 0.69 0.847564
Target:  5'- cCGACGCCgcaucuGGGGCGCCGacgccgcccccacAAucuAGCGGUa -3'
miRNA:   3'- -GCUGUGG------UCCCGUGGCa------------UUu--UCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.