miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24368 3' -54.6 NC_005264.1 + 26373 0.66 0.956991
Target:  5'- aGGCugCGcGGCGCCGUcucuGAgcGCGGc -3'
miRNA:   3'- gCUGugGUcCCGUGGCA----UUuuCGCCa -5'
24368 3' -54.6 NC_005264.1 + 72891 0.68 0.880835
Target:  5'- -cGCGCCAGcGGcCGCCGau-GGGCGGa -3'
miRNA:   3'- gcUGUGGUC-CC-GUGGCauuUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 100482 0.68 0.880835
Target:  5'- gCGGCgGCCAGGGCcCUGgaggGGuuGCGGg -3'
miRNA:   3'- -GCUG-UGGUCCCGuGGCa---UUuuCGCCa -5'
24368 3' -54.6 NC_005264.1 + 130111 1.08 0.005201
Target:  5'- aCGACACCAGGGCACCGUAAAAGCGGUu -3'
miRNA:   3'- -GCUGUGGUCCCGUGGCAUUUUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 131579 0.66 0.948965
Target:  5'- gCGGCACCu-GGCGCCuagGUGuggagGGAGCGGc -3'
miRNA:   3'- -GCUGUGGucCCGUGG---CAU-----UUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 53112 0.66 0.948965
Target:  5'- aGGCGCUcggcgAGGGgGCCGaGGAGGcCGGg -3'
miRNA:   3'- gCUGUGG-----UCCCgUGGCaUUUUC-GCCa -5'
24368 3' -54.6 NC_005264.1 + 108140 0.66 0.940002
Target:  5'- cCGGgAUCGGGGgGCCGUcGAGccucGCGGg -3'
miRNA:   3'- -GCUgUGGUCCCgUGGCAuUUU----CGCCa -5'
24368 3' -54.6 NC_005264.1 + 121795 0.67 0.934666
Target:  5'- aCGGCGCCcaauacguuaggaGGGGCA-CGUGGAaggcacAGCGGc -3'
miRNA:   3'- -GCUGUGG-------------UCCCGUgGCAUUU------UCGCCa -5'
24368 3' -54.6 NC_005264.1 + 49848 0.67 0.913396
Target:  5'- aCGGCACCGGGGCccuggugacGCCGcgc-AGCGu- -3'
miRNA:   3'- -GCUGUGGUCCCG---------UGGCauuuUCGCca -5'
24368 3' -54.6 NC_005264.1 + 95332 0.68 0.880835
Target:  5'- cCGcCGCC-GGGCGCCGcGAAacggacucGGCGGg -3'
miRNA:   3'- -GCuGUGGuCCCGUGGCaUUU--------UCGCCa -5'
24368 3' -54.6 NC_005264.1 + 104394 0.67 0.907353
Target:  5'- uCGACGCCAaGGaCAUCG--AAGGCGGa -3'
miRNA:   3'- -GCUGUGGUcCC-GUGGCauUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 21501 0.67 0.930083
Target:  5'- uGugACguGGGCACCGccgucgcAGUGGg -3'
miRNA:   3'- gCugUGguCCCGUGGCauuu---UCGCCa -5'
24368 3' -54.6 NC_005264.1 + 2756 0.66 0.953094
Target:  5'- aCGGCGcgucCCccGGCGCCGUAccgucuggGGAGUGGUc -3'
miRNA:   3'- -GCUGU----GGucCCGUGGCAU--------UUUCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 93160 0.67 0.907353
Target:  5'- aGuCACCgucGGGGCGCCGcuccagacuGGGCGGa -3'
miRNA:   3'- gCuGUGG---UCCCGUGGCauu------UUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 76243 0.66 0.953094
Target:  5'- -aGCGCUuGGGUguggaGCCGUGAcuGCGGUc -3'
miRNA:   3'- gcUGUGGuCCCG-----UGGCAUUuuCGCCA- -5'
24368 3' -54.6 NC_005264.1 + 101583 0.67 0.930083
Target:  5'- gGuACGCCgAGGcGCGCCGUGAgcugGAGCGc- -3'
miRNA:   3'- gC-UGUGG-UCC-CGUGGCAUU----UUCGCca -5'
24368 3' -54.6 NC_005264.1 + 65531 0.68 0.887809
Target:  5'- uGGCACCGGGGCGCCcucUAGuuGCc-- -3'
miRNA:   3'- gCUGUGGUCCCGUGGc--AUUuuCGcca -5'
24368 3' -54.6 NC_005264.1 + 64265 0.68 0.880835
Target:  5'- gGGCugC-GGGCGCCGUucaucuuGCGGc -3'
miRNA:   3'- gCUGugGuCCCGUGGCAuuuu---CGCCa -5'
24368 3' -54.6 NC_005264.1 + 144520 0.66 0.948965
Target:  5'- uCGugGgCAGaGGCaACUGgcAGGGCGGg -3'
miRNA:   3'- -GCugUgGUC-CCG-UGGCauUUUCGCCa -5'
24368 3' -54.6 NC_005264.1 + 38356 0.66 0.944153
Target:  5'- gGGCGgCGGGGCGguuaggaccuccuCCGgcGAGAGCGGc -3'
miRNA:   3'- gCUGUgGUCCCGU-------------GGCa-UUUUCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.