Results 1 - 20 of 80 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24369 | 3' | -59 | NC_005264.1 | + | 129904 | 1.07 | 0.002262 |
Target: 5'- aACAUACAGACUCACGCGGCGCCCCCGc -3' miRNA: 3'- -UGUAUGUCUGAGUGCGCCGCGGGGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 50571 | 0.77 | 0.257514 |
Target: 5'- cGCGUGCGGGaagcgCACGCGGCGCUgagcagCCCGg -3' miRNA: 3'- -UGUAUGUCUga---GUGCGCCGCGG------GGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 110626 | 0.73 | 0.400713 |
Target: 5'- gGCGUACcaGCUCGCGCcaccGCGCCCCaCGg -3' miRNA: 3'- -UGUAUGucUGAGUGCGc---CGCGGGG-GC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 155818 | 0.73 | 0.409085 |
Target: 5'- aGCAcGCAGACcccaauaacuuUCACGuUGGCGCCgCCCGc -3' miRNA: 3'- -UGUaUGUCUG-----------AGUGC-GCCGCGG-GGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 71423 | 0.72 | 0.443633 |
Target: 5'- ---cACAGACUC-CGcCGGUGCCCCgGc -3' miRNA: 3'- uguaUGUCUGAGuGC-GCCGCGGGGgC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 66477 | 0.72 | 0.447178 |
Target: 5'- cGCGgcCAGACUCaaugcuuggcgggcuGCGCGGCGCgCUCGa -3' miRNA: 3'- -UGUauGUCUGAG---------------UGCGCCGCGgGGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 114159 | 0.71 | 0.496485 |
Target: 5'- gACGaGCAGACUCGCGCccagaucuccuCGCCCCCc -3' miRNA: 3'- -UGUaUGUCUGAGUGCGcc---------GCGGGGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 21203 | 0.71 | 0.526836 |
Target: 5'- cCGUAgUAGACUCAauacgGCGGUGCCCCg- -3' miRNA: 3'- uGUAU-GUCUGAGUg----CGCCGCGGGGgc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 58019 | 0.71 | 0.546154 |
Target: 5'- gGCGgACAGGCcgUCGUGCGGCGCCCgCu -3' miRNA: 3'- -UGUaUGUCUG--AGUGCGCCGCGGGgGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 24371 | 0.71 | 0.546154 |
Target: 5'- gGCAUGaccGGCUU-CGCGGCuCCCCCGg -3' miRNA: 3'- -UGUAUgu-CUGAGuGCGCCGcGGGGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 70639 | 0.7 | 0.564712 |
Target: 5'- cGCGcGCAGGCgcgUCAacaacaccguggcCGCGGCGCCgCCGg -3' miRNA: 3'- -UGUaUGUCUG---AGU-------------GCGCCGCGGgGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 9507 | 0.7 | 0.565694 |
Target: 5'- aGCGU-CAG----GCGCGGCGCCCUCGa -3' miRNA: 3'- -UGUAuGUCugagUGCGCCGCGGGGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 115947 | 0.7 | 0.565694 |
Target: 5'- cGCGgcGCAGGCUaggaggUACGCGGCGCCCg-- -3' miRNA: 3'- -UGUa-UGUCUGA------GUGCGCCGCGGGggc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 128534 | 0.7 | 0.565694 |
Target: 5'- aGCGU-CAG----GCGCGGCGCCCUCGa -3' miRNA: 3'- -UGUAuGUCugagUGCGCCGCGGGGGC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 149555 | 0.7 | 0.575533 |
Target: 5'- -gGUACAuGACUCuccCGCGGacaGCCCCgGg -3' miRNA: 3'- ugUAUGU-CUGAGu--GCGCCg--CGGGGgC- -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 26370 | 0.7 | 0.575533 |
Target: 5'- ---gGCAGGCU-GCGCGGCGCCgUCu -3' miRNA: 3'- uguaUGUCUGAgUGCGCCGCGGgGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 12234 | 0.7 | 0.575533 |
Target: 5'- ---aGCAGACUCGCcccaccucUGGCGCCUCCa -3' miRNA: 3'- uguaUGUCUGAGUGc-------GCCGCGGGGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 131261 | 0.7 | 0.575533 |
Target: 5'- ---aGCAGACUCGCcccaccucUGGCGCCUCCa -3' miRNA: 3'- uguaUGUCUGAGUGc-------GCCGCGGGGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 32977 | 0.7 | 0.585409 |
Target: 5'- gACAcGCGGGCUCGCGCauaucgccaucgGGCGCuggucggauugCCCCa -3' miRNA: 3'- -UGUaUGUCUGAGUGCG------------CCGCG-----------GGGGc -5' |
|||||||
24369 | 3' | -59 | NC_005264.1 | + | 152004 | 0.7 | 0.585409 |
Target: 5'- gACAcGCGGGCUCGCGCauaucgccaucgGGCGCuggucggauugCCCCa -3' miRNA: 3'- -UGUaUGUCUGAGUGCG------------CCGCG-----------GGGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home