Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24369 | 5' | -49.8 | NC_005264.1 | + | 100563 | 0.67 | 0.992299 |
Target: 5'- gAUCGcgggacaAGGGCGCAaagcgccgucguUGUACAGcCUGuGGCg -3' miRNA: 3'- -UAGC-------UCUUGCGU------------AUAUGUCaGAC-CCG- -5' |
|||||||
24369 | 5' | -49.8 | NC_005264.1 | + | 75728 | 0.67 | 0.992408 |
Target: 5'- -cCGcGGGCGCcgGaggcCAGUCUGGGUg -3' miRNA: 3'- uaGCuCUUGCGuaUau--GUCAGACCCG- -5' |
|||||||
24369 | 5' | -49.8 | NC_005264.1 | + | 51848 | 0.67 | 0.993428 |
Target: 5'- gGUCauGGAGCGCAguagggagACGGUCUccucGGGCg -3' miRNA: 3'- -UAGc-UCUUGCGUaua-----UGUCAGA----CCCG- -5' |
|||||||
24369 | 5' | -49.8 | NC_005264.1 | + | 125528 | 0.67 | 0.994335 |
Target: 5'- uGUCGAGAgaagGCGgGUGUugcuGCGG-CUGcGGCg -3' miRNA: 3'- -UAGCUCU----UGCgUAUA----UGUCaGAC-CCG- -5' |
|||||||
24369 | 5' | -49.8 | NC_005264.1 | + | 93166 | 0.67 | 0.994335 |
Target: 5'- cGUCG-GGGCGCcgcucCAGaCUGGGCg -3' miRNA: 3'- -UAGCuCUUGCGuauauGUCaGACCCG- -5' |
|||||||
24369 | 5' | -49.8 | NC_005264.1 | + | 22320 | 0.67 | 0.995138 |
Target: 5'- aGUCuGGcGCGCGgg-GCaaugGGUCUGGGCu -3' miRNA: 3'- -UAGcUCuUGCGUauaUG----UCAGACCCG- -5' |
|||||||
24369 | 5' | -49.8 | NC_005264.1 | + | 85566 | 0.66 | 0.995846 |
Target: 5'- uUCGuucGAGCGCGgcaccGUGCAccacGUgCUGGGCa -3' miRNA: 3'- uAGCu--CUUGCGUa----UAUGU----CA-GACCCG- -5' |
|||||||
24369 | 5' | -49.8 | NC_005264.1 | + | 31783 | 0.66 | 0.99701 |
Target: 5'- cGUCucGGACGCAUu--CGGgucgucUCUGGGCu -3' miRNA: 3'- -UAGcuCUUGCGUAuauGUC------AGACCCG- -5' |
|||||||
24369 | 5' | -49.8 | NC_005264.1 | + | 15868 | 0.66 | 0.997482 |
Target: 5'- cUCGAGGAgGCucc-GCAGcCUGcGGCc -3' miRNA: 3'- uAGCUCUUgCGuauaUGUCaGAC-CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home