Results 21 - 40 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24370 | 3' | -53.3 | NC_005264.1 | + | 152307 | 0.66 | 0.96738 |
Target: 5'- gCGCCccuGAGgGCggcGCCGcacagGACCCG-CUCg -3' miRNA: 3'- -GCGGu--UUCgCGa--UGGU-----UUGGGCuGAG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 147247 | 0.66 | 0.964106 |
Target: 5'- uGCCGGAGcCGCaGCUgcGCCCGcaaGCUUg -3' miRNA: 3'- gCGGUUUC-GCGaUGGuuUGGGC---UGAG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 139940 | 0.66 | 0.964106 |
Target: 5'- aCGaCCGAcgcGGUGCUGCUAucguGCCCGAa-- -3' miRNA: 3'- -GC-GGUU---UCGCGAUGGUu---UGGGCUgag -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 100174 | 0.66 | 0.964106 |
Target: 5'- aCGCCGAAGCGaucuuggcgaaCUA-CGAGCgCGACUUc -3' miRNA: 3'- -GCGGUUUCGC-----------GAUgGUUUGgGCUGAG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 144673 | 0.66 | 0.96738 |
Target: 5'- gCGCC-GAGCGUcaGCCGAcaaGCCUGuCUCu -3' miRNA: 3'- -GCGGuUUCGCGa-UGGUU---UGGGCuGAG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 51654 | 0.66 | 0.964106 |
Target: 5'- aCGUUu-AGCGCUGCCAcucgcguaGACCCGGu-- -3' miRNA: 3'- -GCGGuuUCGCGAUGGU--------UUGGGCUgag -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 99803 | 0.66 | 0.970437 |
Target: 5'- gGCCGAGGCGauggucGCCGAcCCCGGg-- -3' miRNA: 3'- gCGGUUUCGCga----UGGUUuGGGCUgag -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 27657 | 0.66 | 0.975926 |
Target: 5'- gGCCAcgcGGCGCUcggACCGAgguACgCGGCUg -3' miRNA: 3'- gCGGUu--UCGCGA---UGGUU---UGgGCUGAg -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 53661 | 0.66 | 0.973283 |
Target: 5'- uGCCAgaGAGCGUUACUAugaacaaggugGACCUGAg-- -3' miRNA: 3'- gCGGU--UUCGCGAUGGU-----------UUGGGCUgag -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 149577 | 0.66 | 0.970437 |
Target: 5'- aGCCccgggcggaGGGGgGCUGCuCGAugCCGAgUCu -3' miRNA: 3'- gCGG---------UUUCgCGAUG-GUUugGGCUgAG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 54537 | 0.66 | 0.970437 |
Target: 5'- uGCCAGuAGUGUUcGCCG---CCGACUCg -3' miRNA: 3'- gCGGUU-UCGCGA-UGGUuugGGCUGAG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 146722 | 0.66 | 0.964106 |
Target: 5'- uGCCugauGAGCGggGCagaaaGAACCCGGC-Cg -3' miRNA: 3'- gCGGu---UUCGCgaUGg----UUUGGGCUGaG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 73150 | 0.66 | 0.963766 |
Target: 5'- uGCCAGcugguAGCGCUcaugcccACCGccAGCUCGuCUCa -3' miRNA: 3'- gCGGUU-----UCGCGA-------UGGU--UUGGGCuGAG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 42701 | 0.66 | 0.960608 |
Target: 5'- uCGCCGGccGGCGCU-CCGuccuCCUG-CUCg -3' miRNA: 3'- -GCGGUU--UCGCGAuGGUuu--GGGCuGAG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 117940 | 0.66 | 0.970141 |
Target: 5'- uGCUcAAGCGCUAUCAcgagaugauauuuGGCCCGGa-- -3' miRNA: 3'- gCGGuUUCGCGAUGGU-------------UUGGGCUgag -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 62395 | 0.66 | 0.96738 |
Target: 5'- -uCCGGAGCGCagaguaauucUGuuGGGCCCGGCUUc -3' miRNA: 3'- gcGGUUUCGCG----------AUggUUUGGGCUGAG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 66306 | 0.66 | 0.964106 |
Target: 5'- -uUCGAGGUcCUGCCAu-CCUGACUCa -3' miRNA: 3'- gcGGUUUCGcGAUGGUuuGGGCUGAG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 134734 | 0.66 | 0.964106 |
Target: 5'- aGCCAcgauAGGCGCcggUGCgCAAuaacGCCUGACUUu -3' miRNA: 3'- gCGGU----UUCGCG---AUG-GUU----UGGGCUGAG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 33280 | 0.66 | 0.96738 |
Target: 5'- gCGCCccuGAGgGCggcGCCGcacagGACCCG-CUCg -3' miRNA: 3'- -GCGGu--UUCgCGa--UGGU-----UUGGGCuGAG- -5' |
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24370 | 3' | -53.3 | NC_005264.1 | + | 147557 | 0.66 | 0.975926 |
Target: 5'- uGCCGuuGCGCgugaaGCCGuagauGCCCGAaagCg -3' miRNA: 3'- gCGGUuuCGCGa----UGGUu----UGGGCUga-G- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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