miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 5' -62.8 NC_005264.1 + 55178 0.66 0.652522
Target:  5'- gGGCGCGGcugaaGGCGGCGaCCGcGAa -3'
miRNA:   3'- gCCGCGUCccaaaCCGCCGC-GGC-CUc -5'
24370 5' -62.8 NC_005264.1 + 109088 0.66 0.652522
Target:  5'- uGGCGaAGacga-GGaCGGCGCCGGAGa -3'
miRNA:   3'- gCCGCgUCccaaaCC-GCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 91496 0.66 0.652522
Target:  5'- -cGCuGCGGGGUUUcGGCGGCGUa-GAa -3'
miRNA:   3'- gcCG-CGUCCCAAA-CCGCCGCGgcCUc -5'
24370 5' -62.8 NC_005264.1 + 45392 0.66 0.652522
Target:  5'- aGGCGCGGcaaacgauGGag-GGCGGCGCCc--- -3'
miRNA:   3'- gCCGCGUC--------CCaaaCCGCCGCGGccuc -5'
24370 5' -62.8 NC_005264.1 + 79213 0.66 0.642803
Target:  5'- uGGgGCuAGGcugcGUgcaGGCGGCGgCGGGGg -3'
miRNA:   3'- gCCgCG-UCC----CAaa-CCGCCGCgGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 28339 0.66 0.642803
Target:  5'- gCGGCGUAcGGGUagcgGGCGacacGCGCaauuGGAGu -3'
miRNA:   3'- -GCCGCGU-CCCAaa--CCGC----CGCGg---CCUC- -5'
24370 5' -62.8 NC_005264.1 + 146945 0.66 0.642803
Target:  5'- uGGCGCAGaGGc-UGGaUGGCGCU-GAGg -3'
miRNA:   3'- gCCGCGUC-CCaaACC-GCCGCGGcCUC- -5'
24370 5' -62.8 NC_005264.1 + 5954 0.66 0.642803
Target:  5'- -cGCGCAGGGca--GCGGCGCauucgCGGAu -3'
miRNA:   3'- gcCGCGUCCCaaacCGCCGCG-----GCCUc -5'
24370 5' -62.8 NC_005264.1 + 124980 0.66 0.642803
Target:  5'- -cGCGCAGGGca--GCGGCGCauucgCGGAu -3'
miRNA:   3'- gcCGCGUCCCaaacCGCCGCG-----GCCUc -5'
24370 5' -62.8 NC_005264.1 + 34909 0.66 0.64183
Target:  5'- aGG-GCAGGGUUacUGGCccaguGCGCCcgccucaGGAGa -3'
miRNA:   3'- gCCgCGUCCCAA--ACCGc----CGCGG-------CCUC- -5'
24370 5' -62.8 NC_005264.1 + 109350 0.66 0.633076
Target:  5'- cCGGCGCAuGGGgcuucuaUGGUGGgggaguucggcCGUCGGAa -3'
miRNA:   3'- -GCCGCGU-CCCaa-----ACCGCC-----------GCGGCCUc -5'
24370 5' -62.8 NC_005264.1 + 101930 0.66 0.623349
Target:  5'- uGGCGCGcgaaacUGGCGGCGUCGGc- -3'
miRNA:   3'- gCCGCGUcccaa-ACCGCCGCGGCCuc -5'
24370 5' -62.8 NC_005264.1 + 25714 0.66 0.623349
Target:  5'- uGGCGCGGGcGgca-GCGGUGCguacucggucgCGGAGa -3'
miRNA:   3'- gCCGCGUCC-CaaacCGCCGCG-----------GCCUC- -5'
24370 5' -62.8 NC_005264.1 + 115948 0.66 0.614599
Target:  5'- gCGGCGCAGGcuaggagguacGCGGCGCCcGAc -3'
miRNA:   3'- -GCCGCGUCCcaaac------CGCCGCGGcCUc -5'
24370 5' -62.8 NC_005264.1 + 155428 0.66 0.611684
Target:  5'- cCGGCGCAcgaaccaaUGGacgaCGGCGCCGGGGc -3'
miRNA:   3'- -GCCGCGUcccaa---ACC----GCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 19887 0.66 0.603918
Target:  5'- gCGGcCGCGcuagccauuucGGGUgcuuugUGGUGGCGCCGu-- -3'
miRNA:   3'- -GCC-GCGU-----------CCCAa-----ACCGCCGCGGCcuc -5'
24370 5' -62.8 NC_005264.1 + 25212 0.66 0.603918
Target:  5'- uGGCGCAcacGGUggccagGGCaGUGCCGGcAGa -3'
miRNA:   3'- gCCGCGUc--CCAaa----CCGcCGCGGCC-UC- -5'
24370 5' -62.8 NC_005264.1 + 67634 0.67 0.594229
Target:  5'- gGGCGCAGGGguguccUGcGCGGC-CCGu-- -3'
miRNA:   3'- gCCGCGUCCCaa----AC-CGCCGcGGCcuc -5'
24370 5' -62.8 NC_005264.1 + 32921 0.67 0.584564
Target:  5'- -cGCGCAGGGgucgcGG-GGCGCCGcguGAGu -3'
miRNA:   3'- gcCGCGUCCCaaa--CCgCCGCGGC---CUC- -5'
24370 5' -62.8 NC_005264.1 + 109637 0.67 0.584564
Target:  5'- gGGCGCGacGGUUgcaacucGCGGCcCCGGAGa -3'
miRNA:   3'- gCCGCGUc-CCAAac-----CGCCGcGGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.