miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 3' -51.6 NC_005264.1 + 97167 0.66 0.994552
Target:  5'- cGCGagAGCCACGuguGaacuaggggcaggucUCGGUauUGGUUACCg -3'
miRNA:   3'- -CGCaaUCGGUGC---U---------------AGUCG--GCCAAUGG- -5'
24371 3' -51.6 NC_005264.1 + 30388 0.66 0.994223
Target:  5'- cGCGUcucggcGGCgGCGGUCGcgcGCCGG-UGCg -3'
miRNA:   3'- -CGCAa-----UCGgUGCUAGU---CGGCCaAUGg -5'
24371 3' -51.6 NC_005264.1 + 29687 0.66 0.994223
Target:  5'- aGCGUccAGCCuCG-UCAuCCGGUcGCCu -3'
miRNA:   3'- -CGCAa-UCGGuGCuAGUcGGCCAaUGG- -5'
24371 3' -51.6 NC_005264.1 + 134369 0.66 0.994223
Target:  5'- cGCGccaucgcagauUUAGCCAguGUCcgucGUCGGUUACCu -3'
miRNA:   3'- -CGC-----------AAUCGGUgcUAGu---CGGCCAAUGG- -5'
24371 3' -51.6 NC_005264.1 + 113475 0.66 0.994223
Target:  5'- cGCGgucguGCCACGGUC-GCgCGagUGCCa -3'
miRNA:   3'- -CGCaau--CGGUGCUAGuCG-GCcaAUGG- -5'
24371 3' -51.6 NC_005264.1 + 60718 0.66 0.994223
Target:  5'- uUGUUGGCCGCGGccUCGuaccGCCGccaGCCg -3'
miRNA:   3'- cGCAAUCGGUGCU--AGU----CGGCcaaUGG- -5'
24371 3' -51.6 NC_005264.1 + 149415 0.66 0.994223
Target:  5'- cGCGUcucggcGGCgGCGGUCGcgcGCCGG-UGCg -3'
miRNA:   3'- -CGCAa-----UCGgUGCUAGU---CGGCCaAUGg -5'
24371 3' -51.6 NC_005264.1 + 104107 0.66 0.9937
Target:  5'- aGCGgcGGCCGCGGaugcccugaagaaaaUCGcGCUGGcugACCc -3'
miRNA:   3'- -CGCaaUCGGUGCU---------------AGU-CGGCCaa-UGG- -5'
24371 3' -51.6 NC_005264.1 + 29333 0.66 0.993331
Target:  5'- aGCGccuccugcGGCUACGAcgUCuGCCGGguacGCCg -3'
miRNA:   3'- -CGCaa------UCGGUGCU--AGuCGGCCaa--UGG- -5'
24371 3' -51.6 NC_005264.1 + 150167 0.66 0.993331
Target:  5'- ----gGGCCACGAUaaaauugcuGCCGGccgGCCu -3'
miRNA:   3'- cgcaaUCGGUGCUAgu-------CGGCCaa-UGG- -5'
24371 3' -51.6 NC_005264.1 + 133069 0.66 0.993331
Target:  5'- gGCGUgcgAGCCGCGAgcgAGCUguGGUgcgaGCUg -3'
miRNA:   3'- -CGCAa--UCGGUGCUag-UCGG--CCAa---UGG- -5'
24371 3' -51.6 NC_005264.1 + 69507 0.66 0.99233
Target:  5'- cGCGU--GCCACGccGUUAGCUGGc--CCu -3'
miRNA:   3'- -CGCAauCGGUGC--UAGUCGGCCaauGG- -5'
24371 3' -51.6 NC_005264.1 + 60610 0.66 0.99233
Target:  5'- uCGUauGCCGCGG-CAGCCGGcucGCg -3'
miRNA:   3'- cGCAauCGGUGCUaGUCGGCCaa-UGg -5'
24371 3' -51.6 NC_005264.1 + 122829 0.66 0.99233
Target:  5'- uGCGUggcGGuCCGCGAguUCGGgcCCGGgcgggGCCg -3'
miRNA:   3'- -CGCAa--UC-GGUGCU--AGUC--GGCCaa---UGG- -5'
24371 3' -51.6 NC_005264.1 + 3803 0.66 0.99233
Target:  5'- uGCGUggcGGuCCGCGAguUCGGgcCCGGgcgggGCCg -3'
miRNA:   3'- -CGCAa--UC-GGUGCU--AGUC--GGCCaa---UGG- -5'
24371 3' -51.6 NC_005264.1 + 90862 0.66 0.99233
Target:  5'- cGCGUaGGaUCGCGAUUcuguGCCGGcaaauagcaUUACCg -3'
miRNA:   3'- -CGCAaUC-GGUGCUAGu---CGGCC---------AAUGG- -5'
24371 3' -51.6 NC_005264.1 + 69152 0.66 0.99233
Target:  5'- cGCGcuacuGCCACGGUaAGCgCGGUgAUCa -3'
miRNA:   3'- -CGCaau--CGGUGCUAgUCG-GCCAaUGG- -5'
24371 3' -51.6 NC_005264.1 + 75410 0.66 0.991215
Target:  5'- uGCGc-GGCCGCGggCAGUguaCGGcggGCCg -3'
miRNA:   3'- -CGCaaUCGGUGCuaGUCG---GCCaa-UGG- -5'
24371 3' -51.6 NC_005264.1 + 60890 0.66 0.991215
Target:  5'- gGCGUacGCCGCGGUgGGgCCGac-GCCg -3'
miRNA:   3'- -CGCAauCGGUGCUAgUC-GGCcaaUGG- -5'
24371 3' -51.6 NC_005264.1 + 6832 0.66 0.991215
Target:  5'- aGCGUc-GCCGgGcgUAccuuGCUGGUUGCCg -3'
miRNA:   3'- -CGCAauCGGUgCuaGU----CGGCCAAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.